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Exoribonuclease

From Wikipedia, the free encyclopedia
Class of enzymes that degrade RNA
Reaction diagrams for both hydrolytic (left) and phosphorolytic (right) 3'-5' exoribonuclease degradation of RNA.

Anexoribonuclease is anexonucleaseribonuclease, which are enzymes that degradeRNA by removing terminalnucleotides from either the5' end or the3' end of the RNA molecule. Enzymes that remove nucleotides from the 5' end are called5'-3' exoribonucleases, and enzymes that remove nucleotides from the 3' end are called3'-5' exoribonucleases.

Exoribonucleases can use either water to cleave the nucleotide-nucleotide bond (which is called hydrolytic activity) orinorganic phosphate (which is called phosphorolytic activity). Hydrolytic exoribonucleases are classified underEC number 3.1 and phosphorolytic exoribonucleases under EC number 2.7.7. As the phosphorolytic enzymes use inorganic phosphate to cleave bonds they releasenucleotide diphosphates, whereas the hydrolytic enzymes (which use water) releasenucleotide monosphosphates.

Exoribonucleases exist in all kingdoms of life, thebacteria,archaea, andeukaryotes. Exoribonucleases are involved in the degradation of many different RNA species, includingmessenger RNA,transfer RNA,ribosomal RNA andmiRNA. Exoribonucleases can be single proteins (such asRNase D orRNase PH) but also can be complexes of multiple proteins, such as theexosome complex (in which four of the major exoribonuclease families are represented).

Major families

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FamilyExample membersDistributionCatalytic activity
RNRRNase RMost bacteria, all eukaryotes3'-5' hydrolytic
RNase II
Rrp44
DEDDRNase DCertain bacteria, all eukaryotes3'-5' hydrolytic
RNase T
PM/Scl-100
Oligoribonuclease
RBNRNase BNCertain bacteria3'-5' hydrolytic
PDXPNPaseAll kingdoms3'-5' phosphorolytic
PM/Scl-75
RNase PH
RRP4Rrp4All eukaryotes, most archaea3'-5' hydrolytic
5PXExoribonuclease IAll eukaryotes5'-3' hydrolytic
Exoribonuclease II

See also

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References

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External links

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3.1.1:Carboxylic
ester hydrolases
3.1.2:Thioesterase
3.1.3:Phosphatase
3.1.4:
Phosphodiesterase
3.1.6:Sulfatase
Nuclease (includes
deoxyribonuclease
andribonuclease)
3.1.11-16:
Exonuclease
Exodeoxyribonuclease
Exoribonuclease
3.1.21-31:
Endonuclease
Endodeoxyribonuclease
Endoribonuclease
either deoxy- or ribo-    
Transferases:phosphorus-containing groups (EC 2.7)
2.7.1-2.7.4:
phosphotransferase/kinase
(PO4)
2.7.1:OH acceptor
2.7.2:COOH acceptor
2.7.3:N acceptor
2.7.4:PO4 acceptor
2.7.6:diphosphotransferase
(P2O7)
2.7.7:nucleotidyltransferase
(PO4-nucleoside)
Polymerase
DNA polymerase
DNA-directed DNA polymerase
I/A
γ
θ
ν
T7
Taq
II/B
α
δ
ε
ζ
Pfu
III/C
IV/X
β
λ
μ
TDT
V/Y
η
ι
κ
RNA-directed DNA polymerase
Reverse transcriptase
Telomerase
RNA polymerase
Phosphorolytic
3' to 5'exoribonuclease
Nucleotidyltransferase
Guanylyltransferase
Other
2.7.8: miscellaneous
Phosphatidyltransferases
Glycosyl-1-phosphotransferase
2.7.10-2.7.13:protein kinase
(PO4; protein acceptor)
2.7.10:protein-tyrosine
2.7.11:protein-serine/threonine
2.7.12: protein-dual-specificity
2.7.13: protein-histidine
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