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Ephrin B2

From Wikipedia, the free encyclopedia
(Redirected fromEFNB2)

Protein-coding gene in the species Homo sapiens
EFNB2
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2HLE,2I85,2VSK,2VSM,2WO2,3GXU,4UF7

Identifiers
AliasesEFNB2, EPLG5, HTKL, Htk-L, LERK5, ephrin B2
External IDsOMIM:600527;MGI:105097;HomoloGene:3019;GeneCards:EFNB2;OMA:EFNB2 - orthologs
Gene location (Human)
Chromosome 13 (human)
Chr.Chromosome 13 (human)[1]
Chromosome 13 (human)
Genomic location for EFNB2
Genomic location for EFNB2
Band13q33.3Start106,489,745bp[1]
End106,535,662bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for EFNB2
Genomic location for EFNB2
Band8 A1.1|8 3.42 cMStart8,667,434bp[2]
End8,711,242bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • ventricular zone

  • ganglionic eminence

  • mucosa of sigmoid colon

  • visceral pleura

  • amniotic fluid

  • parietal pleura

  • periodontal fiber

  • secondary oocyte

  • nipple

  • hair follicle
Top expressed in
  • lumbar spinal ganglion

  • medullary collecting duct

  • renal corpuscle

  • hair follicle

  • Rostral migratory stream

  • right lung

  • left lung

  • ganglionic eminence

  • vas deferens

  • vestibular membrane of cochlear duct
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

1948

13642

Ensembl

ENSG00000125266

ENSMUSG00000001300

UniProt

P52799

P52800

RefSeq (mRNA)

NM_004093
NM_001372056
NM_001372057
NM_001372058

NM_010111
NM_001368299

RefSeq (protein)

NP_004084
NP_001358985
NP_001358986
NP_001358987

NP_034241
NP_001355228

Location (UCSC)Chr 13: 106.49 – 106.54 MbChr 8: 8.67 – 8.71 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Ephrin-B2 is aprotein that in humans is encoded by theEFNB2gene.[5]

Function

[edit]

This gene encodes a member of theephrin (EPH) family. The ephrins and EPH-related receptors comprise the largest subfamily of receptor protein-tyrosine kinases and have been implicated in mediating developmental events, especially in the nervous system and inerythropoiesis. Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to the membrane by a glycosylphosphatidylinositol linkage, and the ephrin-B (EFNB) class, which are transmembrane proteins. This gene encodes an EFNB class ephrin which binds to theEPHB4 andEPHA3 receptors.[6]

Cancer

[edit]

EFNB2 gene has been observed progressively downregulated inHuman papillomavirus-positiveneoplastic keratinocytes derived from uterine cervicalpreneoplastic lesions at different levels of malignancy.[7] For this reason, EFNB2 is likely to be associated with tumorigenesis and may be a potential prognostic marker for uterine cervicalpreneoplastic lesions progression.[7]

Interactions

[edit]

EFNB2 has been shown tointeract withEPHA3[8][9] andEPHB1 inoptic chiasm development.[10]

EFNB2 has also been shown to serve as a receptor forHendra Virus and Nipah Virus, mediatingentry into the cell during infection.[11]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000125266Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000001300Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Bonaldo MF, Yu MT, Jelenc P, Brown S, Su L, Lawton L, Deaven L, Efstratiadis A, Warburton D, Soares MB (Sep 1994). "Selection of cDNAs using chromosome-specific genomic clones: application to human chromosome 13".Human Molecular Genetics.3 (9):1663–73.doi:10.1093/hmg/3.9.1663.PMID 7833926.
  6. ^"Entrez Gene: EFNB2 ephrin-B2".
  7. ^abRotondo JC, Bosi S, Bassi C, Ferracin M, Lanza G, Gafà R, Magri E, Selvatici R, Torresani S, Marci R, Garutti P, Negrini M, Tognon M, Martini F (April 2015). "Gene expression changes in progression of cervical neoplasia revealed by microarray analysis of cervical neoplastic keratinocytes".J Cell Physiol.230 (4):802–812.doi:10.1002/jcp.24808.hdl:11392/2066612.PMID 25205602.S2CID 24986454.
  8. ^Cerretti DP, Vanden Bos T, Nelson N, Kozlosky CJ, Reddy P, Maraskovsky E, Park LS, Lyman SD, Copeland NG, Gilbert DJ (Nov 1995)."Isolation of LERK-5: a ligand of the eph-related receptor tyrosine kinases".Molecular Immunology.32 (16):1197–205.doi:10.1016/0161-5890(95)00108-5.PMID 8559144.
  9. ^Lackmann M, Mann RJ, Kravets L, Smith FM, Bucci TA, Maxwell KF, Howlett GJ, Olsson JE, Vanden Bos T, Cerretti DP, Boyd AW (Jun 1997)."Ligand for EPH-related kinase (LERK) 7 is the preferred high affinity ligand for the HEK receptor".The Journal of Biological Chemistry.272 (26):16521–30.doi:10.1074/jbc.272.26.16521.PMID 9195962.
  10. ^Williams SE, Mann F, Erskine L, Sakurai T, Wei S, Rossi DJ, Gale NW, Holt CE, Mason CA, Henkemeyer M (September 2003)."Ephrin-B2 and EphB1 mediate retinal axon divergence at the optic chiasm".Neuron.39 (6):919–35.doi:10.1016/j.neuron.2003.08.017.PMID 12971893.
  11. ^Bonaparte MI, Dimitrov AS, Bossart KN, Crameri G, Mungall BA, Bishop KA, Choudhry V, Dimitrov DS, Wang LF, Eaton BT, Broder CC (July 2005)."Ephrin-B2 ligand is a functional receptor for Hendra virus and Nipah virus".Proceedings of the National Academy of Sciences of the United States of America.102 (30):10652–7.Bibcode:2005PNAS..10210652B.doi:10.1073/pnas.0504887102.PMC 1169237.PMID 15998730.

Further reading

[edit]
PDB gallery
  • 1iko: CRYSTAL STRUCTURE OF THE MURINE EPHRIN-B2 ECTODOMAIN
    1iko: CRYSTAL STRUCTURE OF THE MURINE EPHRIN-B2 ECTODOMAIN
  • 1kgy: Crystal Structure of the EphB2-ephrinB2 complex
    1kgy: Crystal Structure of the EphB2-ephrinB2 complex
  • 2hle: Structural and biophysical characterization of the EPHB4-EPHRINB2 protein protein interaction and receptor specificity
    2hle: Structural and biophysical characterization of the EPHB4-EPHRINB2 protein protein interaction and receptor specificity
Intercellular signaling peptides and proteins /ligands
Growth factors
Ephrin
Other
Angiopoietin
CNTF
EGF (ErbB)
EGF
(ErbB1/HER1)
ErbB2/HER2
ErbB3/HER3
ErbB4/HER4
FGF
FGFR1
FGFR2
FGFR3
FGFR4
Unsorted
HGF (c-Met)
IGF
IGF-1
IGF-2
Others
LNGF (p75NTR)
PDGF
RET (GFL)
GFRα1
GFRα2
GFRα3
GFRα4
Unsorted
SCF (c-Kit)
TGFβ
Trk
TrkA
TrkB
TrkC
VEGF
Others


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