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Desmond G. Higgins

From Wikipedia, the free encyclopedia
Irish bioinformatics professor

Des Higgins
Des Higgins speaking at theISMB conference in 2015.
Born
Desmond Gerard Higgins

(1959-07-17)17 July 1959 (age 66)[7]
Alma materTrinity College, Dublin (PhD)
Known for
Awards
Scientific career
Fields
Institutions
ThesisA numerical taxonomy of the Pterygote insects (1988)
Academic advisorsPaul M. Sharp[5][6]
Website

Desmond Gerard Higgins is aProfessor ofBioinformatics atUniversity College Dublin,[3][12][13][14] widely known forCLUSTAL,[15] a series of computer programs for performingmultiple sequence alignment. According toNature, Higgins' papers describing CLUSTAL[10][11] are among the top ten most highly citedscientific papers of all time.[16][17][18]

Education

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Higgins was educated atTrinity College, Dublin[19] where he was awarded an B.A. (mod) in Botany in 1981 andPhD in 1988 for research onnumerical taxonomy ofPterygote insects.[20][21]

Research

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Research in the Higgins laboratory[3] focuses on developing new bioinformatics and statistical tools forevolutionary biology. TheCLUSTAL program formultiple sequence alignment has been developed in the Higgins lab and theT-Coffee software was initially developed in the lab with by Cedric Notredame.Multivariate statistics are used to analysemicroarray data sets andmolecular evolution such as the evolution ofpromoters,introns andnon-coding RNA.[12][19]

Awards and honours

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Higgins was elected aFellow of theInternational Society for Computational Biology (ISCB) in 2015.[1] He was awarded the Kimura Motoo Award in 2016 for his contributions to the advancement of evolutionary biology and molecular phylogeny.[22] In 2018, Higgins received theBenjamin Franklin Award for open access in the life sciences.[2] In March 2023, Higgins was awarded the Lennart Philipson Award in recognition of his major contributions towards enabling bioinformatics technologies based on multiple sequence alignment.[23]

References

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  1. ^ab"ISCB Fellows". International Society for Computational Biology. Archived fromthe original on 15 April 2015.
  2. ^ab"Benjamin Franklin Award - Bioinformatics.org".www.bioinformatics.org. Retrieved16 March 2018.
  3. ^abcDesmond G. Higgins publications indexed byGoogle ScholarEdit this at Wikidata
  4. ^abNotredame, C. D.; Higgins, D. G.; Heringa, J. (2000). "T-coffee: A novel method for fast and accurate multiple sequence alignment".Journal of Molecular Biology.302 (1):205–17.doi:10.1006/jmbi.2000.4042.PMID 10964570.S2CID 10189971.
  5. ^"Des Higgins, PhD: Computational Biology Tree".academictree.org. Archived fromthe original on 14 July 2017.
  6. ^Sharp, Paul M.; Cowe, Elizabeth;Higgins, Desmond G.; Shields, Denis C.;Wolfe, Kenneth H.; Wright, Frank (1988)."Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity".Nucleic Acids Research.16 (17):8207–8211.doi:10.1093/nar/16.17.8207.ISSN 0305-1048.PMC 338553.PMID 3138659.
  7. ^Des Higgins atLibrary of Congress
  8. ^Higgins, Desmond G.;Sharp, Paul M. (1988). "CLUSTAL: a package for performing multiple sequence alignment on a microcomputer".Gene.73 (1):237–244.doi:10.1016/0378-1119(88)90330-7.PMID 3243435.
  9. ^Higgins, Desmond G.;Sharp, Paul M. (1989). "Fast and sensitive multiple sequence alignments on a microcomputer".Bioinformatics.5 (2):151–153.doi:10.1093/bioinformatics/5.2.151.PMID 2720464.
  10. ^abThompson, J. D.; Gibson, T. J.; Plewniak, F.; Jeanmougin, F.; Higgins, D. G. (1997)."The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools".Nucleic Acids Research.25 (24):4876–4882.doi:10.1093/nar/25.24.4876.PMC 147148.PMID 9396791.
  11. ^abThompson, J. D.; Higgins, D. G.; Gibson, T. J. (1994)."CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice".Nucleic Acids Research.22 (22):4673–4680.doi:10.1093/nar/22.22.4673.PMC 308517.PMID 7984417.
  12. ^ab"Professor Desmond Gerard Higgins B.A.(Mod), PhD". Dublin: University College Dubin. Archived fromthe original on 5 April 2015.
  13. ^"Des Higgins laboratory". University College Dublin. Archived fromthe original on 14 December 2014.
  14. ^Desmond G. Higgins publications fromEurope PubMed Central
  15. ^Des Higgins: Visualizing Multiple Sequence Alignments onYouTube, Broad Institute
  16. ^Van Noorden, R.; Maher, B.;Nuzzo, R. (2014)."The top 100 papers: Nature explores the most-cited research of all time".Nature.514 (7524):550–3.doi:10.1038/514550a.PMID 25355343.
  17. ^Gorey, Colm (2014)."Irish professor Des Higgins in top 10 most cited papers of all time". Dublin: siliconrepublic.com. Archived fromthe original on 5 June 2015.
  18. ^Desmond G. Higgins publications indexed by theScopus bibliographic database.(subscription required)
  19. ^abDes HigginsORCID 0000-0002-3952-3285
  20. ^Sherlock, D.J.M. (2006).Trinity College Record Volume 2006. Dublin: Trinity College Dublin Press.ISBN 1-871408-07-5.
  21. ^Higgins, Des (1981).A numerical taxonomy of Pterygote insects (PhD thesis). Trinity College, Dublin.OCLC 842505334.ProQuest 301410442.
  22. ^"Prof Des Higgins to Receive Kimura Motoo Award".UCD School of Medicine. Retrieved31 May 2021.
  23. ^"EMBL Alumni Awards Announced for 2023".EMBL Alumni Awards. 29 March 2023. Retrieved31 March 2023.
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