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DNM1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

DNM1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1DYN,2DYN,2X2E,2X2F,3SNH,3ZYC,3ZYS,4UUD,4UUK,5D3Q

Identifiers
AliasesDNM1, Dynamin-1, DNM, EIEE31, dynamin 1, DEE31
External IDsOMIM:602377;MGI:107384;HomoloGene:123905;GeneCards:DNM1;OMA:DNM1 - orthologs
Gene location (Human)
Chromosome 9 (human)
Chr.Chromosome 9 (human)[1]
Chromosome 9 (human)
Genomic location for DNM1
Genomic location for DNM1
Band9q34.11Start128,191,655bp[1]
End128,255,248bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for DNM1
Genomic location for DNM1
Band2 B|2 22.09 cMStart32,198,483bp[2]
End32,243,350bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right hemisphere of cerebellum

  • Brodmann area 10

  • middle temporal gyrus

  • superior frontal gyrus

  • right frontal lobe

  • frontal pole

  • paraflocculus of cerebellum

  • Parietal Lobe

  • Brodmann area 46

  • postcentral gyrus
Top expressed in
  • CA3 field

  • entorhinal cortex

  • perirhinal cortex

  • dentate gyrus of hippocampal formation granule cell

  • superior frontal gyrus

  • cingulate gyrus

  • cerebellar cortex

  • central gray substance of midbrain

  • pontine nuclei

  • prefrontal cortex
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

1759

13429

Ensembl

ENSG00000106976

ENSMUSG00000026825

UniProt

Q05193

P39053

RefSeq (mRNA)
NM_001005336
NM_001288737
NM_001288738
NM_001288739
NM_004408

NM_001374269

NM_001301737
NM_010065
NM_001368679

RefSeq (protein)
NP_001005336
NP_001275666
NP_001275667
NP_001275668
NP_004399

NP_001361198

NP_001288666
NP_034195
NP_001355608

Location (UCSC)Chr 9: 128.19 – 128.26 MbChr 2: 32.2 – 32.24 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Dynamin-1 is aprotein that in humans is encoded by theDNM1gene.[5][6]

Function

[edit]

Dynamin possesses uniquemechanochemical properties used to tubulate and severmembranes, and is involved in clathrin-mediated endocytosis and othervesicular trafficking processes. Actin and othercytoskeletal proteins act as binding partners for thedynamin, which can also self-assemble leading to stimulation ofGTPase activity. More than sixty highly conserved copies of the 3' region of this gene are found elsewhere in thegenome, particularly onchromosomes Y and 15. Alternatively spliced transcript variants encoding differentisoforms have been described.[7]

Role in disease

[edit]

De novo mutations in DNM1 have been associated with a severe form of childhood epilepsy called developmental and epileptic encephalopathy. Most pathogenic variants are missense variants, and have been shown to impairsynaptic vesicleendocytosis in a dominant negative manner.[8]

Interactions

[edit]

DNM1 has been shown tointeract with:

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000106976Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000026825Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Obar RA, Collins CA, Hammarback JA, Shpetner HS, Vallee RB (October 1990). "Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins".Nature.347 (6290):256–61.Bibcode:1990Natur.347..256O.doi:10.1038/347256a0.PMID 2144893.S2CID 4264539.
  6. ^Newman-Smith ED, Shurland DL, van der Bliek AM (July 1997). "Assignment of the dynamin-1 gene (DNM1) to human chromosome 9q34 by fluorescence in situ hybridization and somatic cell hybrid analysis".Genomics.41 (2):286–9.doi:10.1006/geno.1996.4596.PMID 9143509.
  7. ^"Entrez Gene: DNM1 dynamin 1".
  8. ^Dhindsa RS, Bradrick SS, Yao X, Heinzen EL, Petrovski S, Krueger BJ, et al. (June 2015)."Epileptic encephalopathy-causing mutations in DNM1 impair synaptic vesicle endocytosis".Neurology. Genetics.1 (1): e4.doi:10.1212/01.NXG.0000464295.65736.da.PMC 4821085.PMID 27066543.
  9. ^abMicheva KD, Kay BK, McPherson PS (October 1997)."Synaptojanin forms two separate complexes in the nerve terminal. Interactions with endophilin and amphiphysin".J. Biol. Chem.272 (43):27239–45.doi:10.1074/jbc.272.43.27239.PMID 9341169.
  10. ^Wigge P, Köhler K, Vallis Y, Doyle CA, Owen D, Hunt SP, McMahon HT (October 1997)."Amphiphysin heterodimers: potential role in clathrin-mediated endocytosis".Mol. Biol. Cell.8 (10):2003–15.doi:10.1091/mbc.8.10.2003.PMC 25662.PMID 9348539.
  11. ^McMahon HT, Wigge P, Smith C (August 1997). "Clathrin interacts specifically with amphiphysin and is displaced by dynamin".FEBS Lett.413 (2):319–22.doi:10.1016/s0014-5793(97)00928-9.PMID 9280305.S2CID 42520828.
  12. ^Chen-Hwang MC, Chen HR, Elzinga M, Hwang YW (May 2002)."Dynamin is a minibrain kinase/dual specificity Yak1-related kinase 1A substrate".J. Biol. Chem.277 (20):17597–604.doi:10.1074/jbc.M111101200.PMID 11877424.
  13. ^Grabs D, Slepnev VI, Songyang Z, David C, Lynch M, Cantley LC, De Camilli P (May 1997)."The SH3 domain of amphiphysin binds the proline-rich domain of dynamin at a single site that defines a new SH3 binding consensus sequence".J. Biol. Chem.272 (20):13419–25.doi:10.1074/jbc.272.20.13419.PMID 9148966.
  14. ^abKamioka Y, Fukuhara S, Sawa H, Nagashima K, Masuda M, Matsuda M, Mochizuki N (September 2004)."A novel dynamin-associating molecule, formin-binding protein 17, induces tubular membrane invaginations and participates in endocytosis".J. Biol. Chem.279 (38):40091–9.doi:10.1074/jbc.M404899200.PMID 15252009.
  15. ^Miki H, Miura K, Matuoka K, Nakata T, Hirokawa N, Orita S, Kaibuchi K, Takai Y, Takenawa T (February 1994)."Association of Ash/Grb-2 with dynamin through the Src homology 3 domain".J. Biol. Chem.269 (8):5489–92.doi:10.1016/S0021-9258(17)37484-7.PMID 8119878.
  16. ^Sastry L, Cao T, King CR (January 1997)."Multiple Grb2-protein complexes in human cancer cells".Int. J. Cancer.70 (2):208–13.doi:10.1002/(sici)1097-0215(19970117)70:2<208::aid-ijc12>3.0.co;2-e.PMID 9009162.S2CID 10317185.
  17. ^Wunderlich L, Faragó A, Buday L (January 1999). "Characterization of interactions of Nck with Sos and dynamin".Cell. Signal.11 (1):25–9.doi:10.1016/s0898-6568(98)00027-8.PMID 10206341.
  18. ^Modregger J, Ritter B, Witter B, Paulsson M, Plomann M (December 2000). "All three PACSIN isoforms bind to endocytic proteins and inhibit endocytosis".J. Cell Sci.113 (24):4511–21.doi:10.1242/jcs.113.24.4511.PMID 11082044.
  19. ^Modregger J, Schmidt AA, Ritter B, Huttner WB, Plomann M (February 2003)."Characterization of Endophilin B1b, a brain-specific membrane-associated lysophosphatidic acid acyl transferase with properties distinct from endophilin A1".J. Biol. Chem.278 (6):4160–7.doi:10.1074/jbc.M208568200.PMID 12456676.

Further reading

[edit]
PDB gallery
  • 1dyn: CRYSTAL STRUCTURE AT 2.2 ANGSTROMS RESOLUTION OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM HUMAN DYNAMIN
    1dyn: CRYSTAL STRUCTURE AT 2.2 ANGSTROMS RESOLUTION OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM HUMAN DYNAMIN
  • 2aka: Structure of the nucleotide-free myosin II motor domain from Dictyostelium discoideum fused to the GTPase domain of dynamin 1 from Rattus norvegicus
    2aka: Structure of the nucleotide-free myosin II motor domain from Dictyostelium discoideum fused to the GTPase domain of dynamin 1 from Rattus norvegicus
  • 2dyn: DYNAMIN (PLECKSTRIN HOMOLOGY DOMAIN) (DYNPH)
    2dyn: DYNAMIN (PLECKSTRIN HOMOLOGY DOMAIN) (DYNPH)
Synaptic vesicle
SNARE
Q-SNARE
R-SNARE
Synaptotagmin
Other
COPI
COPII
RME/Clathrin
Caveolae
Other/ungrouped
Vesicle formation
Adaptor protein complex 1:
Adaptor protein complex 2:
Adaptor protein complex 3:
Adaptor protein complex 4:
BLOC-1:
BLOC-2:
BLOC-3:
Coats:
Small GTPase
Other
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