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Cytosine

From Wikipedia, the free encyclopedia
Chemical compound in nucleic acids
Not to be confused withcytokine,cytidine,cysteine,cystine, orcytisine.
Cytosine
Names
Preferred IUPAC name
4-Aminopyrimidin-2(1H)-one
Other names
4-Amino-1H-pyrimidine-2-one
Identifiers
3D model (JSmol)
ChEBI
ChEMBL
ChemSpider
ECHA InfoCard100.000.681Edit this at Wikidata
KEGG
MeSHCytosine
UNII
  • InChI=1S/C4H5N3O/c5-3-1-2-6-4(8)7-3/h1-2H,(H3,5,6,7,8) checkY
    Key: OPTASPLRGRRNAP-UHFFFAOYSA-N checkY
  • InChI=1/C4H5N3O/c5-3-1-2-6-4(8)7-3/h1-2H,(H3,5,6,7,8)
    Key: OPTASPLRGRRNAP-UHFFFAOYAY
  • O=C1Nccc(N)n1
Properties
C4H5N3O
Molar mass111.10 g/mol
Density1.55 g/cm3 (calculated)
Melting point320 to 325 °C (608 to 617 °F; 593 to 598 K) (decomposes)
Acidity (pKa)4.45 (secondary), 12.2 (primary)[1]
−55.8·10−6 cm3/mol
Except where otherwise noted, data are given for materials in theirstandard state (at 25 °C [77 °F], 100 kPa).
checkY verify (what is checkY☒N ?)
Chemical compound

Cytosine[a] (symbolC orCyt) is one of the fournucleotide bases found inDNA andRNA, along withadenine,guanine, andthymine (uracil in RNA). It is apyrimidine derivative, with aheterocyclicaromatic ring and two substituents attached (anamine group at position 4 and aketo group at position 2). Thenucleoside of cytosine iscytidine. InWatson–Crick base pairing, it forms threehydrogen bonds withguanine.

History

[edit]

Cytosine was discovered and named byAlbrecht Kossel and Albert Neumann in 1894 when it was hydrolyzed from calfthymus tissues.[4][5] A structure was proposed in 1903, and was synthesized (and thus confirmed) in the laboratory in the same year.

In 1998, cytosine was used in an early demonstration ofquantum information processing when Oxford University researchers implemented theDeutsch–Jozsa algorithm on a twoqubitnuclear magnetic resonance quantum computer (NMRQC).[6]

In March 2015, NASA scientists reported the formation of cytosine, along with uracil and thymine, frompyrimidine under the space-like laboratory conditions, which is of interest because pyrimidine has been found in meteorites although its origin is unknown.[7]

Chemical reactions

[edit]
Cytosine
Cytosine and guanine with the direction of hydrogen bonding indicated (arrow points positive to negative charge).
Methylation of cytosine occurs on carbon number 5.

Cytosine can be found as part of DNA, as part of RNA, or as a part of anucleotide. Ascytidine triphosphate (CTP), it can act as a co-factor to enzymes, and can transfer a phosphate to convertadenosine diphosphate (ADP) toadenosine triphosphate (ATP).

In DNA and RNA, cytosine is paired withguanine. However, it is inherently unstable, and can change intouracil (spontaneous deamination). This can lead to apoint mutation if not repaired by theDNA repairenzymes such as uracil glycosylase, which cleaves a uracil in DNA.

Cytosine can also bemethylated into5-methylcytosine by an enzyme calledDNA methyltransferase or be methylated andhydroxylated to make5-hydroxymethylcytosine. The difference in rates of deamination of cytosine and 5-methylcytosine (to uracil andthymine) forms the basis ofbisulfite sequencing.[8]

Biological function

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When found third in acodon ofRNA, cytosine is synonymous withuracil, as they are interchangeable as the third base.When found as the second base in a codon, the third is always interchangeable. For example, UCU, UCC, UCA and UCG are allserine, regardless of the third base.

Active enzymatic deamination of cytosine or 5-methylcytosine by theAPOBEC family of cytosine deaminases could have both beneficial and detrimental implications on various cellular processes as well as on organismal evolution.[9] The implications of deamination on 5-hydroxymethylcytosine, on the other hand, remains less understood.

Theoretical aspects

[edit]

Until October 2021, Cytosine had not been found in meteorites, which suggested the first strands of RNA and DNA had to look elsewhere to obtain this building block. Cytosine likely formed within some meteorite parent bodies, however did not persist within these bodies due to an effectivedeamination reaction intouracil.[10]

In October 2021, Cytosine was announced as having been found in meteorites by researchers in a joint Japan/NASA project, that used novel methods of detection which avoided damaging nucleotides as they were extracted from meteorites.[11]

Notes

[edit]
  1. ^Pronunciation:/ˈstəˌsn,-ˌzn,-ˌsɪn/[2][3]

References

[edit]
  1. ^Dawson, R.M.C.; et al. (1959).Data for Biochemical Research. Oxford: Clarendon Press.
  2. ^"Cytosine".Dictionary.com Unabridged (Online). n.d.
  3. ^"Cytosine".Merriam-Webster.com Dictionary. Merriam-Webster.OCLC 1032680871.
  4. ^A. Kossel and Albert Neumann (1894)"Darstellung und Spaltungsprodukte der Nucleïnsäure (Adenylsäure)" (Preparation and cleavage products of nucleic acids (adenic acid)),Berichte der Deutschen Chemischen Gesellschaft zu Berlin,27 : 2215–2222. The name "cytosine" is coined on page 2219:" … ein Produkt von basischen Eigenschaften, für welches wir den Namen "Cytosin" vorschlagen." ( … a product with basic properties, for which we suggest the name "cytosine".)
  5. ^Kossel, A.; Steudel, H. Z. (1903)."Weitere Untersuchungen über das Cytosin".Physiol. Chem.38 (1–2):49–59.doi:10.1515/bchm2.1903.38.1-2.49.
  6. ^Jones, J.A.; M. Mosca (1998-08-01)."Implementation of a quantum algorithm on a nuclear magnetic resonance quantum computer".J. Chem. Phys.109 (5):1648–1653.arXiv:quant-ph/9801027.Bibcode:1998JChPh.109.1648J.doi:10.1063/1.476739.S2CID 19348964. Archived fromthe original on 2008-06-12. Retrieved2007-10-18.
  7. ^Marlaire, Ruth (3 March 2015)."NASA Ames Reproduces the Building Blocks of Life in Laboratory".NASA. Archived fromthe original on 5 March 2015. Retrieved5 March 2015.
  8. ^Hayatsu, Hikoya (2008)."Discovery of bisulfite-mediated cytosine conversion to uracil, the key reaction for DNA methylation analysis — A personal account".Proceedings of the Japan Academy. Series B, Physical and Biological Sciences.84 (8):321–330.Bibcode:2008PJAB...84..321H.doi:10.2183/pjab.84.321.ISSN 0386-2208.PMC 3722019.PMID 18941305.
  9. ^Chahwan R.; Wontakal S.N.; Roa S. (2010). "Crosstalk between genetic and epigenetic information through cytosine deamination".Trends in Genetics.26 (10):443–448.doi:10.1016/j.tig.2010.07.005.PMID 20800313.
  10. ^Tasker, Elizabeth."Did the Seeds of Life Come from Space?".Scientific American Blog Network. Retrieved2016-11-24.
  11. ^Yasuhiro Oba; Yoshinori Takano; Yoshihiro Furukawa; Toshiki Koga; Daniel P. Glavin; Jason P. Dworkin; Hiroshi Naraoka (2022)."Identifying the wide diversity of extraterrestrial purine and pyrimidine nucleobases in carbonaceous meteorites".Nature Communications.13 (1). Nature.com: 2008.Bibcode:2022NatCo..13.2008O.doi:10.1038/s41467-022-29612-x.PMC 9042847.PMID 35473908.

External links and citations

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Wikimedia Commons has media related toCytosine.
Nucleic acid constituents
Nucleobase
Nucleoside
Ribonucleoside
Deoxyribonucleoside
Nucleotide
(Nucleoside monophosphate)
Ribonucleotide
Deoxyribonucleotide
Cyclic nucleotide
Nucleoside diphosphate
Nucleoside triphosphate
Receptor
(ligands)
P0 (adenine)
P1
(adenosine)
P2
(nucleotide)
P2X
(ATPTooltip Adenosine triphosphate)
P2Y
Transporter
(blockers)
CNTsTooltip Concentrative nucleoside transporters
ENTsTooltip Equilibrative nucleoside transporters
PMATTooltip Plasma membrane monoamine transporter
Enzyme
(inhibitors)
XOTooltip Xanthine oxidase
Others
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