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Chromosome 14

From Wikipedia, the free encyclopedia
(Redirected fromChromosome 14 (human))
Human chromosome
Chromosome 14
Human chromosome 14 pair afterG-banding.
One is from mother, one is from father.
Chromosome 14 pair
in human malekaryogram.
Features
Length (bp)101,161,492 bp
(CHM13)
No. of genes583 (CCDS)[1]
TypeAutosome
Centromere positionAcrocentric[2]
(17.2 Mbp[3])
Complete gene lists
CCDSGene list
HGNCGene list
UniProtGene list
NCBIGene list
External map viewers
EnsemblChromosome 14
EntrezChromosome 14
NCBIChromosome 14
UCSCChromosome 14
Full DNA sequences
RefSeqNC_000014 (FASTA)
GenBankCM000676 (FASTA)

Chromosome 14 is one of the 23 pairs ofchromosomes inhumans. People normally have two copies of this chromosome. Chromosome 14 spans about 107 millionbase pairs (the building material ofDNA) and represents between 3 and 3.5% of the total DNA incells.

Thecentromere of chromosome 14 is positioned approximately at position 17.2 Mbp.

Genes

[edit]

Number of genes

[edit]

The following are some of the gene count estimates of human chromosome 14. Because researchers use different approaches togenome annotation their predictions of thenumber of genes on each chromosome varies (for technical details, seegene prediction). Among various projects, the collaborative consensus coding sequence project (CCDS) takes an extremely conservative strategy. So CCDS's gene number prediction represents a lower bound on the total number of human protein-coding genes.[4]

Estimated byProtein-coding genesNon-coding RNA genesPseudogenesSourceRelease date
CCDS583[1]2016-09-08
HGNC593324513[5]2017-05-12
Ensembl820856518[6]2017-03-29
UniProt720[7]2018-02-28
NCBI621690598[8][9][10]2017-05-19

Gene list

[edit]
See also:Category:Genes on human chromosome 14

The following is a partial list of genes on human chromosome 14. For complete list, see the link in the infobox on the right.

Diseases and disorders

[edit]

The following diseases are some of those related to genes on chromosome 14:


Cytogenetic band

[edit]
G-banding ideograms of human chromosome 14
G-banding ideogram of human chromosome 14 in resolution 850 bphs. Band length in this diagram is proportional to base-pair length. This type of ideogram is generally used in genome browsers (e.g.Ensembl,UCSC Genome Browser).
G-banding patterns of human chromosome 14 in three different resolutions (400,[12] 550[13] and 850[3]). Band length in this diagram is based on the ideograms from ISCN (2013).[14] This type of ideogram represents actual relative band length observed under a microscope at the different moments during themitotic process.[15]
G-bands of human chromosome 14 in resolution 850 bphs[16]
Chr.Arm[17]Band[18]ISCN
start[19]
ISCN
stop[19]
Basepair
start
Basepair
stop
Stain[20]Density
14p13028413,600,000gvar
14p122846243,600,0018,000,000stalk
14p11.262412498,000,00116,100,000gvar
14p11.11249143316,100,00117,200,000acen
14q11.11433166017,200,00118,200,000acen
14q11.21660204318,200,00124,100,000gneg
14q122043231324,100,00132,900,000gpos100
14q13.12313246932,900,00134,800,000gneg
14q13.22469258234,800,00136,100,000gpos50
14q13.32582272436,100,00137,400,000gneg
14q21.12724292337,400,00143,000,000gpos100
14q21.22923300843,000,00146,700,000gneg
14q21.33008326446,700,00150,400,000gpos100
14q22.13264349150,400,00153,600,000gneg
14q22.23491360453,600,00155,000,000gpos25
14q22.33604371855,000,00157,600,000gneg
14q23.13718391657,600,00161,600,000gpos75
14q23.23916404461,600,00164,300,000gneg
14q23.34044418664,300,00167,400,000gpos50
14q24.14186448467,400,00169,800,000gneg
14q24.24484462669,800,00173,300,000gpos50
14q24.34626483973,300,00178,800,000gneg
14q31.14839505178,800,00183,100,000gpos100
14q31.25051509483,100,00184,400,000gneg
14q31.35094534984,400,00189,300,000gpos100
14q32.115349540689,300,00191,400,000gneg
14q32.125406550591,400,00194,200,000gpos25
14q32.135505561994,200,00195,800,000gneg
14q32.25619573295,800,001100,900,000gpos50
14q32.3157325903100,900,001102,700,000gneg
14q32.3259036016102,700,001103,500,000gpos50
14q32.3360166300103,500,001107,043,718gneg

References

[edit]
  1. ^ab"Search results - 14[CHR] AND "Homo sapiens"[Organism] AND ("has ccds"[Properties] AND alive[prop]) - Gene".NCBI. CCDS Release 20 forHomo sapiens. 2016-09-08. Retrieved2017-05-28.
  2. ^Tom Strachan; Andrew Read (2 April 2010).Human Molecular Genetics. Garland Science. p. 45.ISBN 978-1-136-84407-2.
  3. ^abGenome Decoration Page, NCBI.Ideogram data for Homo sapience (850 bphs, Assembly GRCh38.p3). Last update 2014-06-03. Retrieved 2017-04-26.
  4. ^Pertea M, Salzberg SL (2010)."Between a chicken and a grape: estimating the number of human genes".Genome Biol.11 (5): 206.doi:10.1186/gb-2010-11-5-206.PMC 2898077.PMID 20441615.
  5. ^"Statistics & Downloads for chromosome 14".HUGO Gene Nomenclature Committee. 2017-05-12. Retrieved2017-05-19.
  6. ^"Chromosome 14: Chromosome summary - Homo sapiens".Ensembl Release 88. 2017-03-29. Retrieved2017-05-19.
  7. ^"Human chromosome 14: entries, gene names and cross-references to MIM".UniProt. 2018-02-28. Retrieved2018-03-16.
  8. ^"Search results - 14[CHR] AND "Homo sapiens"[Organism] AND ("genetype protein coding"[Properties] AND alive[prop]) - Gene".NCBI. 2017-05-19. Retrieved2017-05-20.
  9. ^"Search results - 14[CHR] AND "Homo sapiens"[Organism] AND ( ("genetype miscrna"[Properties] OR "genetype ncrna"[Properties] OR "genetype rrna"[Properties] OR "genetype trna"[Properties] OR "genetype scrna"[Properties] OR "genetype snrna"[Properties] OR "genetype snorna"[Properties]) NOT "genetype protein coding"[Properties] AND alive[prop]) - Gene".NCBI. 2017-05-19. Retrieved2017-05-20.
  10. ^"Search results - 14[CHR] AND "Homo sapiens"[Organism] AND ("genetype pseudo"[Properties] AND alive[prop]) - Gene".NCBI. 2017-05-19. Retrieved2017-05-20.
  11. ^Quiat D, Voelker KA, Pei J, Grishin NV, Grange RW, Bassel-Duby R, Olson EN (June 2011)."Concerted regulation of myofiber-specific gene expression and muscle performance by the transcriptional repressor Sox6".Proc. Natl. Acad. Sci. U.S.A.108 (25):10196–201.Bibcode:2011PNAS..10810196Q.doi:10.1073/pnas.1107413108.PMC 3121857.PMID 21633012.
  12. ^Genome Decoration Page, NCBI.Ideogram data for Homo sapience (400 bphs, Assembly GRCh38.p3). Last update 2014-03-04. Retrieved 2017-04-26.
  13. ^Genome Decoration Page, NCBI.Ideogram data for Homo sapience (550 bphs, Assembly GRCh38.p3). Last update 2015-08-11. Retrieved 2017-04-26.
  14. ^International Standing Committee on Human Cytogenetic Nomenclature (2013).ISCN 2013: An International System for Human Cytogenetic Nomenclature (2013). Karger Medical and Scientific Publishers.ISBN 978-3-318-02253-7.
  15. ^Sethakulvichai, W.; Manitpornsut, S.; Wiboonrat, M.; Lilakiatsakun, W.; Assawamakin, A.; Tongsima, S. (2012)."Estimation of band level resolutions of human chromosome images".2012 Ninth International Conference on Computer Science and Software Engineering (JCSSE). pp. 276–282.doi:10.1109/JCSSE.2012.6261965.ISBN 978-1-4673-1921-8.S2CID 16666470.
  16. ^Genome Decoration Page, NCBI.Ideogram data for Homo sapience (850 bphs, Assembly GRCh38.p3). Last update 2014-06-03. Retrieved 2017-04-26.
  17. ^"p": Short arm; "q": Long arm.
  18. ^For cytogenetic banding nomenclature, see articlelocus.
  19. ^abThese values (ISCN start/stop) are based on the length of bands/ideograms from the ISCN book, An International System for Human Cytogenetic Nomenclature (2013).Arbitrary unit.
  20. ^gpos: Region which is positively stained byG banding, generallyAT-rich and gene poor;gneg: Region which is negatively stained by G banding, generallyCG-rich and gene rich;acenCentromere.var: Variable region;stalk: Stalk.
  • Campo E (2003). "Genetic and molecular genetic studies in the diagnosis of B-cell lymphomas I: mantle cell lymphoma, follicular lymphoma, and Burkitt's lymphoma".Hum Pathol.34 (4):330–5.doi:10.1053/hupa.2003.97.PMID 12733111.
  • Gilbert F (1999). "Disease genes and chromosomes: disease maps of the human genome. Chromosome 14".Genet Test.3 (4):379–91.doi:10.1089/gte.1999.3.379.PMID 10627948.
  • Heilig R, Eckenberg R, Petit JL, Fonknechten N, Da Silva C, Cattolico L, Levy M, Barbe V, de Berardinis V, Ureta-Vidal A, Pelletier E, Vico V, Anthouard V, Rowen L, Madan A, Qin S, Sun H, Du H, Pepin K, Artiguenave F, Robert C, Cruaud C, Bruls T, Jaillon O, Friedlander L, Samson G, Brottier P, Cure S, Segurens B, Aniere F, Samain S, Crespeau H, Abbasi N, Aiach N, Boscus D, Dickhoff R, Dors M, Dubois I, Friedman C, Gouyvenoux M, James R, Madan A, Mairey-Estrada B, Mangenot S, Martins N, Menard M, Oztas S, Ratcliffe A, Shaffer T, Trask B, Vacherie B, Bellemere C, Belser C, Besnard-Gonnet M, Bartol-Mavel D, Boutard M, Briez-Silla S, Combette S, Dufosse-Laurent V, Ferron C, Lechaplais C, Louesse C, Muselet D, Magdelenat G, Pateau E, Petit E, Sirvain-Trukniewicz P, Trybou A, Vega-Czarny N, Bataille E, Bluet E, Bordelais I, Dubois M, Dumont C, Guerin T, Haffray S, Hammadi R, Muanga J, Pellouin V, Robert D, Wunderle E, Gauguet G, Roy A, Sainte-Marthe L, Verdier J, Verdier-Discala C, Hillier L, Fulton L, McPherson J, Matsuda F, Wilson R, Scarpelli C, Gyapay G, Wincker P, Saurin W, Quetier F, Waterston R, Hood L,Weissenbach J (2003)."The DNA sequence and analysis of human chromosome 14".Nature.421 (6923):601–7.Bibcode:2003Natur.421..601H.doi:10.1038/nature01348.PMID 12508121.
  • Kamnasaran D, Cox DW (2002)."Current status of human chromosome 14".J Med Genet.39 (2):81–90.doi:10.1136/jmg.39.2.81.PMC 1735028.PMID 11836355.
  • Lemire EG, Cardwell S (1999)."Unusual phenotype in partial trisomy 14".Am J Med Genet.87 (4):294–6.doi:10.1002/(SICI)1096-8628(19991203)87:4<294::AID-AJMG2>3.0.CO;2-S.PMID 10588832.
  • van Karnebeek CD, Quik S, Sluijter S, Hulsbeek MM, Hoovers JM, Hennekam RC (2002). "Further delineation of the chromosome 14q terminal deletion syndrome".Am J Med Genet.110 (1):65–72.doi:10.1002/ajmg.10207.PMID 12116274.

External links

[edit]
Wikimedia Commons has media related toHuman chromosome 14.
  • National Institutes of Health."Chromosome 14".Genetics Home Reference. Archived fromthe original on 2012-02-04. Retrieved2017-05-06.
  • "Chromosome 14".Human Genome Project Information Archive 1990–2003. Retrieved2017-05-06.
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