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Chimpanzee–human last common ancestor

From Wikipedia, the free encyclopedia

Thechimpanzee–human last common ancestor (CHLCA) is thelast common ancestor shared by the extantHomo (human) andPan (chimpanzee andbonobo) genera ofHominini. Estimates of the divergence date vary widely from thirteen to five million years ago.

In human genetic studies, the CHLCA is useful as an anchor point for calculatingsingle-nucleotide polymorphism (SNP) rates in human populations where chimpanzees are used as anoutgroup, that is, as the extant species most genetically similar toHomo sapiens.

Despite extensive research, no direct fossil evidence of the CHLCA has been discovered. Fossil candidates likeSahelanthropus tchadensis,Orrorin tugenensis, andArdipithecus ramidus have been debated as either being early hominins or close to the CHLCA. However, their classification remains uncertain due to incomplete evidence.

Taxonomy

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Main article:Hominini
Hominoidea (hominoids, apes)
Hylobatidae (gibbons)
Hominidae (hominids, great apes)
Ponginae
(orangutans)
Homininae
Gorillini
(gorillas)
Hominini
Panina
(chimpanzees)
Hominina (humans)

The taxontribeHominini was proposed to separate humans (genusHomo) from chimpanzees (Pan) and gorillas (genusGorilla) on the notion that the least similar species should be separated from the other two. However, later evidence revealed thatPan andHomo are closer genetically than arePan andGorilla; thus,Pan was referred to the tribeHominini withHomo.Gorilla now became the separated genus and was referred to the new taxon 'tribeGorillini'.

Mann and Weiss (1996), proposed that the tribeHominini should encompassPan andHomo, grouped in separate subtribes.[1] They classifiedHomo and all bipedal apes in the subtribeHominina andPan in the subtribePanina. (Wood (2010) discussed the different views of this taxonomy.)[2] A "chimpanzee clade" was posited by Wood and Richmond, who referred it to a tribePanini, which was envisioned from the familyHominidae being composed of a trifurcation of subfamilies.[3]

Richard Wrangham (2001) argued that the CHLCA species was very similar to the common chimpanzee (Pan troglodytes) – so much so that it should be classified as a member of the genusPan and be given the taxonomic namePan prior.[4]

All the human-related genera of tribe Hominini that aroseafter divergence fromPan are members of the subtribeHominina, including the generaHomo andAustralopithecus. This group represents "the human clade" and its members are called "hominins".[5]

Fossil evidence

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No fossil has yet conclusively been identified as the CHLCA.

Sahelanthropus tchadensis is an extincthominine with some morphology proposed (and disputed) to be as expected of the CHLCA, and it lived some 7 million years ago – close to the time of the chimpanzee–human divergence. But it is unclear whether it should be classified as a member of the tribe Hominini, that is, a hominin, as an ancestor ofHomo andPan and a potential candidate for the CHLCA species itself, or simply a Miocene ape with some convergent anatomical similarity to many later hominins.

Ardipithecus most likely appeared after the human-chimpanzee split, some 5.5 million years ago, at a time when gene flow may still have been ongoing. It has several shared characteristics with chimpanzees, but due to its fossil incompleteness and the proximity to the human-chimpanzee split, the exact position ofArdipithecus in the fossil record is unclear.[6] However, Sarmiento (2010), noting thatArdipithecus does not share any characteristics exclusive to humans and some of its characteristics (those in the wrist and basicranium), suggested that it may have diverged from the common human/African ape stock prior to the human, chimpanzee and gorilla divergence.[7]

Orrorin, which lived roughly 6 million years ago, seems, based on the fossils that were recovered, to share no derived features of hominoid great-ape relatives.[8] In contrast, "Orrorin seems to share several apomorphic features with modern humans, as well as some withaustralopithecines, including the presence of anobturator externus groove, elongated femoral neck, anteriorly twisted head (posterior twist inAustralopithecus),anteroposteriorly compressed femoral neck, asymmetric distribution of cortex in the femoral neck, shallow superior notch, and a well developed gluteal tuberosity which coalesces vertically with the crest that descends the femoral shaft posteriorly."[8] It does, however, also share many of such properties with several Miocene ape species, even showing some transitional elements between basal apes like theAegyptopithecus andAustralopithecus.[9]

Another candidate that has been suggested isGraecopithecus, though this claim is largely disputed as there is insufficient evidence to support the determination ofGraecopithecus as hominin or hominin-related.[10][11]

Few fossil specimens on the "chimpanzee-side" of the split have been found; the first fossil chimpanzee, dating between 545 and 284 kyr (thousand years,radiometric), was discovered inKenya's East AfricanRift Valley (McBrearty, 2005).[12] All extinct genera listed in the taxobox[which?] are ancestral toHomo, or are offshoots of such. However, bothOrrorin andSahelanthropus existed around the time of the divergence, and so either one or both may be ancestral to both generaHomo andPan.

Due to the scarcity of fossil evidence for CHLCA candidates, Mounier (2016) presented a project to create a "virtual fossil" by applying digital "morphometrics" and statistical algorithms to fossils from across the evolutionary history of bothHomo andPan, having previously used this technique to visualize a skull of the last common ancestor ofNeanderthal andHomo sapiens.[13][14]

Age estimates

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An estimate of 10 to 13 million years for the CHLCA was proposed in 1998,[15] and a range of 7 to 10 million years ago is assumed by White and colleagues in 2009.[16] A 2016 study analyzed transitions atCpG sites in genome sequences, which exhibit a more clocklike behavior than other substitutions, arriving at an estimate for human and chimpanzee divergence time of 12.1 million years.[17]

Studies in the 2020s suggest a more recent CHLCA, such as between 9.3 and 6.5 million years ago in a 2021 article,[18] and between 6.6 and 4.7 million years ago in a 2022 article.[19] In a landmark 2025 paper incomparative genomics, the completetelomere-to-telomere sequences of sixhominoid genomes were used to estimate the CHLCA split as between 6.3 and 5.5 million years ago.[20]

Gene flow

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A source of confusion in determining the exact age of thePanHomo split is evidence of a more complex speciation process than a clean split between the two lineages. Different chromosomes appear to have split at different times, possibly over as much as a 4-million-year period, indicating a long and drawn out speciation process with large-scale gene flow events between the two emerging lineages as recently as 6.3 to 5.4 million years ago, according to Patterson et al. (2006).[21]

Speciation betweenPan andHomo occurred over the last 9 million years.Ardipithecus probably branched off of thePan lineage in the middle MioceneMessinian.[22][23] After the original divergences, there were, according to Patterson (2006), periods of gene flow between population groups and a process of alternating divergence and gene flow that lasted several million years.[21] Some time during the lateMiocene or earlyPliocene, the earliest members of the human clade completed a final separation from the lineage ofPan – with date estimates ranging from 13 million[15] to as recent as 4 million years ago.[21] The latter date was in particular based on the similarity of theX chromosome in humans and chimpanzees, a conclusion rejected as unwarranted by Wakeley (2008), who suggested alternative explanations, including selection pressure on the X chromosome in the populations ancestral to the CHLCA.[note 1]

Complex speciation andincomplete lineage sorting of genetic sequences seem to also have happened in the split between the human lineage and that of the gorilla, indicating "messy" speciation is the rule rather than the exception in large primates.[25][26] Such a scenario would explain why the divergence age between theHomo andPan has varied with the chosen method and why a single point has so far been hard to track down.

See also

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Notes

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  1. ^"Patterson et al. suggest that the apparently short divergence time between humans and chimpanzees on the X chromosome is explained by a massive interspecific gene flow event in the ancestry of these two species. However, Patterson et al. do not statistically test their own null model of simple speciation before concluding that speciation was complex, and—even if the null model could be rejected—they do not consider other explanations of a short divergence time on the X chromosome. These include natural selection on the X chromosome in the common ancestor of humans and chimpanzees, changes in the ratio of male-to-female mutation rates over time, and less extreme divergence versions with gene flow. I, therefore, believe that their claim of gene flow is unwarranted."[24]

References

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  1. ^Mann, Alan; Mark Weiss (1996)."Hominoid Phylogeny and Taxonomy: a consideration of the molecular and Fossil Evidence in an Historical Perspective".Molecular Phylogenetics and Evolution.5 (1):169–181.Bibcode:1996MolPE...5..169M.doi:10.1006/mpev.1996.0011.PMID 8673284.
  2. ^B. Wood (2010)."Reconstructing human evolution: Achievements, challenges, and opportunities".Proceedings of the National Academy of Sciences.107 (Suppl 2):8902–8909.Bibcode:2010PNAS..107.8902W.doi:10.1073/pnas.1001649107.PMC 3024019.PMID 20445105.
  3. ^Wood and Richmond.; Richmond, BG (2000)."Human evolution: taxonomy and paleobiology".Journal of Anatomy.197 (Pt 1):19–60.doi:10.1046/j.1469-7580.2000.19710019.x.PMC 1468107.PMID 10999270.
  4. ^"Out of thePan, Into the Fire" in:Frans B. M. De Waal, ed. (2001).Tree of Origin: What Primate Behavior Can Tell Us About Human Social Evolution. Harvard University Press. pp. 124–126.ISBN 978-0-674-01004-8.
  5. ^Bradley, B. J. (2006)."Reconstructing Phylogenies and Phenotypes: A Molecular View of Human Evolution".Journal of Anatomy.212 (4):337–353.doi:10.1111/j.1469-7580.2007.00840.x.PMC 2409108.PMID 18380860.
  6. ^Wood, Bernard; Harrison, Terry (2011). "The evolutionary context of the first hominins".Nature.470 (7334):347–35.Bibcode:2011Natur.470..347W.doi:10.1038/nature09709.PMID 21331035.S2CID 4428052.
  7. ^Sarmiento, E. E. (2010). "Comment on the Paleobiology and Classification of Ardipithecus ramidus".Science.328 (5982): 1105, author reply 1105.Bibcode:2010Sci...328.1105S.doi:10.1126/science.1184148.PMID 20508113.S2CID 19588815.
  8. ^abPickford, Martin; Senut, Brigitte; Gommery, Dominique; Treil, Jacques (September 2002). "Bipedalism in Orrorin tugenensis revealed by its femora".Comptes Rendus Palevol.1 (4):191–203.Bibcode:2002CRPal...1..191P.doi:10.1016/s1631-0683(02)00028-3.
  9. ^Almécija, Sergio; Tallman, Melissa; Alba, David M.; Pina, Marta; Moyà-Solà, Salvador; Jungers, William L. (3 December 2013)."The femur of Orrorin tugenensis exhibits morphometric affinities with both Miocene apes and later hominins".Nature Communications.4 (1): 2888.Bibcode:2013NatCo...4.2888A.doi:10.1038/ncomms3888.PMID 24301078.
  10. ^Fuss, Jochen; Spassov, Nikolai; Begun, David R.; Böhme, Madelaine (2017)."Potential hominin affinities of Graecopithecus from the Late Miocene of Europe".PLOS ONE.12 (5) e0177127.Bibcode:2017PLoSO..1277127F.doi:10.1371/journal.pone.0177127.PMC 5439669.PMID 28531170.
  11. ^Daley, Jason (23 May 2017)."Controversial Study Claims Apes and Human Ancestors Split in Southern Europe".Smithsonian Magazine.
  12. ^McBrearty, Sally; Nina G. Jablonski (2005). "First fossil chimpanzee".Nature.437 (7055):105–108.Bibcode:2005Natur.437..105M.doi:10.1038/nature04008.PMID 16136135.S2CID 4423286.
  13. ^"'Virtual fossil' reveals last common ancestor of humans and Neanderthals". 18 December 2015. Retrieved30 June 2019.
  14. ^Mounier, Aurélien; Mirazón Lahr, Marta (2016)."Virtual ancestor reconstruction: Revealing the ancestor of modern humans and Neandertals".Journal of Human Evolution.91:57–72.Bibcode:2016JHumE..91...57M.doi:10.1016/j.jhevol.2015.11.002.PMID 26852813.
  15. ^abArnason U, Gullberg A, Janke A (December 1998). "Molecular timing of primate divergences as estimated by two nonprimate calibration points".Journal of Molecular Evolution.47 (6):718–27.Bibcode:1998JMolE..47..718A.doi:10.1007/PL00006431.PMID 9847414.S2CID 22217997.
  16. ^White TD, Asfaw B, Beyene Y, et al. (October 2009). "Ardipithecus ramidus and the paleobiology of early hominids".Science.326 (5949):75–86.Bibcode:2009Sci...326...75W.doi:10.1126/science.1175802.PMID 19810190.S2CID 20189444.
  17. ^Moorjani, Priya; Amorim, Carlos Eduardo G.; Arndt, Peter F.; Przeworski, Molly (2016)."Variation in the molecular clock of primates".Proceedings of the National Academy of Sciences.113 (38):10607–10612.Bibcode:2016PNAS..11310607M.doi:10.1073/pnas.1600374113.ISSN 0027-8424.PMC 5035889.PMID 27601674.
  18. ^Almécija, Sergio; et al. (7 May 2021)."Fossil apes and human evolution".Science.372 (6542).doi:10.1126/science.abb4363.PMID 33958446.
  19. ^Poszewiecka, Barbara; et al. (25 August 2022)."Revised time estimation of the ancestral human chromosome 2 fusion".BMC Genomics.23 (616) 616.doi:10.1186/s12864-022-08828-7.PMC 9413910.PMID 36008753.
  20. ^Yoo, DongAhn; Rhie, Arang; Hebbar, Prajna; Antonacci, Francesca; Logsdon, Glennis A.; Solar, Steven J.; Antipov, Dmitry; Pickett, Brandon D.; Safonova, Yana; Montinaro, Francesco; Luo, Yanting; Malukiewicz, Joanna; Storer, Jessica M.; Lin, Jiadong; Sequeira, Abigail N. (May 2025)."Complete sequencing of ape genomes".Nature.641 (8062):401–418.Bibcode:2025Natur.641..401Y.doi:10.1038/s41586-025-08816-3.ISSN 1476-4687.PMC 12058530.PMID 40205052.
  21. ^abcPatterson N, Richter DJ, Gnerre S, Lander ES, Reich D (June 2006). "Genetic evidence for complex speciation of humans and chimpanzees".Nature.441 (7097):1103–8.Bibcode:2006Natur.441.1103P.doi:10.1038/nature04789.PMID 16710306.S2CID 2325560.
  22. ^Wood, Bernard; Harrison, Terry (2011). "The evolutionary context of the first hominins".Nature.470 (7334):347–52.Bibcode:2011Natur.470..347W.doi:10.1038/nature09709.PMID 21331035.S2CID 4428052.
  23. ^Wolpoff, Milford H. (1996).Human Evolution. McGraw-Hill, Incorporated.ISBN 978-0-07-071833-3.
  24. ^Wakeley J (2008). "Complex speciation of humans and chimpanzees".Nature.452 (7184): E3–4.Bibcode:2008Natur.452....3W.doi:10.1038/nature06805.PMID 18337768.S2CID 4367089.
  25. ^Scally A, Dutheil JY, Hillier LW, et al. (March 2012)."Insights into hominid evolution from the gorilla genome sequence".Nature.483 (7388):169–75.Bibcode:2012Natur.483..169S.doi:10.1038/nature10842.PMC 3303130.PMID 22398555.
  26. ^Van Arsdale, A.P."Go, go, Gorilla genome".The Pleistocene Scene – A.P. Van Arsdale Blog. Retrieved16 November 2012.

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