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Calpain-9

From Wikipedia, the free encyclopedia
Protein found in humans
CAPN9
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1ZIV,2P0R

Identifiers
AliasesCAPN9, GC36, nCL-4, calpain 9
External IDsOMIM:606401;MGI:1920897;HomoloGene:38208;GeneCards:CAPN9;OMA:CAPN9 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for CAPN9
Genomic location for CAPN9
Band1q42.2Start230,747,384bp[1]
End230,802,003bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for CAPN9
Genomic location for CAPN9
Band8|8 E2Start125,302,850bp[2]
End125,345,470bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • C1 segment

  • rectum

  • mucosa of transverse colon

  • body of stomach

  • gastric mucosa

  • mucosa of ileum

  • olfactory zone of nasal mucosa

  • bronchial epithelial cell

  • pancreatic ductal cell

  • right lung
Top expressed in
  • pyloric antrum

  • epithelium of stomach

  • mucous cell of stomach

  • lumbar spinal ganglion

  • embryo

  • duodenum

  • left colon

  • jejunum

  • intestinal villus

  • morula
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

10753

73647

Ensembl

ENSG00000135773

ENSMUSG00000031981

UniProt

O14815

Q9D805

RefSeq (mRNA)

NM_006615
NM_016452
NM_001319676

NM_023709

RefSeq (protein)

NP_001306605
NP_006606
NP_057536

NP_076198

Location (UCSC)Chr 1: 230.75 – 230.8 MbChr 8: 125.3 – 125.35 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Calpain-9 is aprotein that in humans is encoded by theCAPN9gene.[5][6][7]

Calpains are ubiquitous, well-conserved family of calcium-dependent, cysteine proteases. The calpain proteins are heterodimers consisting of an invariant small subunit and variable large subunits. The large subunit possesses a cysteine protease domain, and both subunits possess calcium-binding domains. Calpains have been implicated in neurodegenerative processes, as their activation can be triggered by calcium influx and oxidative stress. The protein encoded by this gene is expressed predominantly in stomach and small intestine and may have specialized functions in the digestive tract. This gene is thought to be associated with gastric cancer. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene.[7]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000135773Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000031981Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Lee HJ, Sorimachi H, Jeong SY, Ishiura S, Suzuki K (May 1998). "Molecular cloning and characterization of a novel tissue-specific calpain predominantly expressed in the digestive tract".Biol Chem.379 (2):175–184.doi:10.1515/bchm.1998.379.2.175.PMID 9524069.S2CID 37483841.
  6. ^Yoshikawa Y, Mukai H, Hino F, Asada K, Kato I (Jul 2000)."Isolation of two novel genes, down-regulated in gastric cancer".Jpn J Cancer Res.91 (5):459–63.doi:10.1111/j.1349-7006.2000.tb00967.x.PMC 5926377.PMID 10835488.
  7. ^ab"Entrez Gene: CAPN9 calpain 9".

Further reading

[edit]

External links

[edit]


PDB gallery
  • 1ziv: Catalytic Domain of Human Calpain-9
    1ziv: Catalytic Domain of Human Calpain-9
  • 2p0r: Structure of Human Calpain 9 in complex with Leupeptin
    2p0r: Structure of Human Calpain 9 in complex with Leupeptin
Caspase
Fruit-derived
Calpain
Cathepsin
Other
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