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COUP-TFII

From Wikipedia, the free encyclopedia
Protein found in humans
NR2F2
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

3CJW

Identifiers
AliasesNR2F2, ARP1, CHTD4, COUPTFB, COUPTFII, NF-E3, NR2F1, SVP40, TFCOUP2, COUP-TFII, nuclear receptor subfamily 2 group F member 2, COUPTF2, ARP-1, SRXX5
External IDsOMIM:107773;MGI:1352452;HomoloGene:7628;GeneCards:NR2F2;OMA:NR2F2 - orthologs
Gene location (Human)
Chromosome 15 (human)
Chr.Chromosome 15 (human)[1]
Chromosome 15 (human)
Genomic location for NR2F2
Genomic location for NR2F2
Band15q26.2Start96,325,938bp[1]
End96,340,263bp[1]
Gene location (Mouse)
Chromosome 7 (mouse)
Chr.Chromosome 7 (mouse)[2]
Chromosome 7 (mouse)
Genomic location for NR2F2
Genomic location for NR2F2
Band7 C|7 38.66 cMStart70,001,692bp[2]
End70,016,483bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • urethra

  • cardia

  • spinal ganglia

  • renal medulla

  • trigeminal ganglion

  • right ovary

  • stromal cell of endometrium

  • decidua

  • seminal vesicula

  • saphenous vein
Top expressed in
  • Gonadal ridge

  • genital tubercle

  • vas deferens

  • gastrula

  • stroma of kidney

  • ascending aorta

  • sciatic nerve

  • anterior amygdaloid area

  • epithelium of stomach

  • aortic valve
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

7026

11819

Ensembl

ENSG00000185551

ENSMUSG00000030551

UniProt

P24468

P43135

RefSeq (mRNA)

NM_021005
NM_001145155
NM_001145156
NM_001145157

NM_009697
NM_183261

RefSeq (protein)

NP_001138627
NP_001138628
NP_001138629
NP_066285

NP_033827
NP_899084

Location (UCSC)Chr 15: 96.33 – 96.34 MbChr 7: 70 – 70.02 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

COUP-TFII (COUP transcription factor 2), also known asNR2F2 (nuclear receptor subfamily 2, group F, member 2) is aprotein that in humans is encoded by theNR2F2gene.[5][6] The COUP acronym stands forchickenovalbuminupstreampromoter.

Function

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COUP-TFII plays a critical role in controlling the development of a number of tissues and organs including heart, blood vessels, muscles and limbs.[7][8]

Theglucocorticoid receptor (GR) stimulates COUP-TFII-inducedtransactivation while COUP-TFII represses the GR transcriptional activity.[9][10] COUP-TFII interacts withGATA2 to inhibitadipocytedifferentiation.[11]

Structure and ligands

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The structure of COUP-TF2 LBD is known.Retinoic acid, although not at physiological concentrations, activate this receptor.[12]

Interactions

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COUP-TFII has been shown tointeract with:

References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000185551 –Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000030551 –Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^"Entrez Gene: NR2F2 nuclear receptor subfamily 2, group F, member 2".
  6. ^Qiu Y, Krishnan V, Zeng Z, Gilbert DJ, Copeland NG, Gibson L, Yang-Feng T, Jenkins NA, Tsai MJ, Tsai SY (September 1995)."Isolation, characterization, and chromosomal localization of mouse and human COUP-TF I and II genes".Genomics.29 (1):240–6.doi:10.1006/geno.1995.1237.PMID 8530078.
  7. ^Pereira FA, Qiu Y, Zhou G,Tsai MJ, Tsai SY (April 1999)."The orphan nuclear receptor COUP-TFII is required for angiogenesis and heart development".Genes Dev.13 (8):1037–49.doi:10.1101/gad.13.8.1037.PMC 316637.PMID 10215630.
  8. ^Lee CT, Li L, Takamoto N, Martin JF, Demayo FJ, Tsai MJ, Tsai SY (December 2004)."The Nuclear Orphan Receptor COUP-TFII Is Required for Limb and Skeletal Muscle Development".Mol. Cell. Biol.24 (24):10835–43.doi:10.1128/MCB.24.24.10835-10843.2004.PMC 533959.PMID 15572686.
  9. ^De Martino MU, Bhattachryya N, Alesci S, Ichijo T, Chrousos GP, Kino T (April 2004)."The glucocorticoid receptor and the orphan nuclear receptor chicken ovalbumin upstream promoter-transcription factor II interact with and mutually affect each other's transcriptional activities: implications for intermediary metabolism".Mol. Endocrinol.18 (4):820–33.doi:10.1210/me.2003-0341.PMID 14739255.
  10. ^De Martino MU, Alesci S, Chrousos GP, Kino T (June 2004)."Interaction of the glucocorticoid receptor and the chicken ovalbumin upstream promoter-transcription factor II (COUP-TFII): implications for the actions of glucocorticoids on glucose, lipoprotein, and xenobiotic metabolism".Ann. N. Y. Acad. Sci.1024 (1):72–85.Bibcode:2004NYASA1024...72D.doi:10.1196/annals.1321.006.PMID 15265774.S2CID 20529633.
  11. ^Xu Z, Yu S, Hsu CH, Eguchi J, Rosen ED (February 2008)."The orphan nuclear receptor chicken ovalbumin upstream promoter-transcription factor II is a critical regulator of adipogenesis".Proc. Natl. Acad. Sci. U.S.A.105 (7):2421–6.Bibcode:2008PNAS..105.2421X.doi:10.1073/pnas.0707082105.PMC 2268152.PMID 18250317.
  12. ^Kruse SW, Suino-Powell K, Zhou XE, Kretschman JE, Reynolds R, Vonrhein C, et al. (September 2008)."Identification of COUP-TFII orphan nuclear receptor as a retinoic acid-activated receptor".PLOS Biology.6 (9) e227.doi:10.1371/journal.pbio.0060227.PMC 2535662.PMID 18798693.
  13. ^Smirnov DA, Hou S, Ricciardi RP (March 2000)."Association of histone deacetylase with COUP-TF in tumorigenic Ad12-transformed cells and its potential role in shut-off of MHC class I transcription".Virology.268 (2):319–28.doi:10.1006/viro.1999.0181.PMID 10704340.
  14. ^Marcus SL, Winrow CJ, Capone JP, Rachubinski RA (November 1996)."A p56(lck) ligand serves as a coactivator of an orphan nuclear hormone receptor".J. Biol. Chem.271 (44):27197–200.doi:10.1074/jbc.271.44.27197.PMID 8910285.
  15. ^Avram D, Ishmael JE, Nevrivy DJ, Peterson VJ, Lee SH, Dowell P, Leid M (May 1999)."Heterodimeric Interactions between Chicken Ovalbumin Upstream Promoter-Transcription Factor Family Members ARP1 and Ear2".J. Biol. Chem.274 (20):14331–6.doi:10.1074/jbc.274.20.14331.PMC 2823254.PMID 10318855.
  16. ^Litchfield LM, Riggs KA, Hockenberry AM, Oliver LD, Barnhart KG, Cai J, Pierce WM, Ivanova MM, Bates PJ, Appana SN, Datta S, Kulesza P, McBryan J, Young LS, Klinge CM (May 2012)."Identification and characterization of nucleolin as a COUP-TFII coactivator of retinoic acid receptor β transcription in breast cancer cells".PLOS ONE.7 (5) e38278.Bibcode:2012PLoSO...738278L.doi:10.1371/journal.pone.0038278.PMC 3365040.PMID 22693611.

External links

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Further reading

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(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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