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CLEC4M

From Wikipedia, the free encyclopedia
Protein-coding gene in humans
CLEC4M
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1K9J,1SL6,1XAR,1XPH,3JQH

Identifiers
AliasesCLEC4M, CD209L, CD299, DC-SIGN2, DC-SIGNR, DCSIGNR, HP10347, L-SIGN, LSIGN, C-type lectin domain family 4 member M
External IDsOMIM:605872;MGI:2157942;HomoloGene:129771;GeneCards:CLEC4M;OMA:CLEC4M - orthologs
Gene location (Human)
Chromosome 19 (human)
Chr.Chromosome 19 (human)[1]
Chromosome 19 (human)
Genomic location for CLEC4M
Genomic location for CLEC4M
Band19p13.2Start7,763,210bp[1]
End7,769,605bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for CLEC4M
Genomic location for CLEC4M
Band8|8 A1.1Start3,793,397bp[2]
End3,798,984bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lobe of liver

  • germinal epithelium

  • lymph node

  • pancreatic ductal cell

  • right lung

  • testicle

  • placenta

  • left ovary

  • right adrenal gland

  • left adrenal cortex
Top expressed in
  • granulocyte

  • lip

  • skin of abdomen

  • right kidney

  • muscle of thigh

  • spleen

  • right lung lobe

  • white adipose tissue

  • carotid body

  • skin of external ear
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

10332

170786

Ensembl

ENSG00000104938

ENSMUSG00000031494

UniProt

Q9H2X3

Q91ZX1

RefSeq (mRNA)
NM_001144904
NM_001144905
NM_001144906
NM_001144907
NM_001144908

NM_001144909
NM_001144910
NM_001144911
NM_014257
NM_214675
NM_214676

NM_133238

RefSeq (protein)
NP_001138376
NP_001138377
NP_001138378
NP_001138379
NP_001138380

NP_001138381
NP_001138382
NP_001138383
NP_055072

NP_573501

Location (UCSC)Chr 19: 7.76 – 7.77 MbChr 8: 3.79 – 3.8 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

C-type lectin domain family 4 member M is aprotein that in humans is encoded by theCLEC4Mgene.[5] CLEC4M has also been designated asCD299 (cluster of differentiation 299).

This gene encodes L-SIGN (liver/lymph node-specific intracellular adhesion molecules-3 grabbing non-integrin), a type II integral membrane protein that is 77% identical toCD209 antigen, anHIV gp120-binding protein. This protein, like CD209, efficiently binds both intercellular adhesion molecule 3 (ICAM3) and HIV-1 gp120, and enhances HIV-1 infection of T cells. This gene is mapped to 19p13.3, in a cluster with the CD209 and CD23/FCER2 genes. Multiple alternatively spliced transcript variants have been found for this gene, but the biological validity of some variants has not been determined.[6]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000104938Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000031494Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Yokoyama-Kobayashi M, Yamaguchi T, Sekine S, Kato S (Apr 1999). "Selection of cDNAs encoding putative type II membrane proteins on the cell surface from a human full-length cDNA bank".Gene.228 (1–2):161–7.doi:10.1016/S0378-1119(99)00004-9.PMID 10072769.
  6. ^"Entrez Gene: CLEC4M C-type lectin domain family 4, member M".

Further reading

[edit]
PDB gallery
  • 1k9j: Complex of DC-SIGNR and GlcNAc2Man3
    1k9j: Complex of DC-SIGNR and GlcNAc2Man3
  • 1sl6: Crystal Structure of a fragment of DC-SIGNR (containing the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.
    1sl6: Crystal Structure of a fragment of DC-SIGNR (containing the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.
  • 1xar: Crystal Structure of a fragment of DC-SIGNR (containing the carbohydrate recognition domain and two repeats of the neck).
    1xar: Crystal Structure of a fragment of DC-SIGNR (containing the carbohydrate recognition domain and two repeats of the neck).
  • 1xph: Structure of DC-SIGNR and a portion of repeat domain 8
    1xph: Structure of DC-SIGNR and a portion of repeat domain 8

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

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