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CLCA1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
CLCA1
Identifiers
AliasesCLCA1, CACC, CACC1, CLCRG1, CaCC-1, GOB5, hhCaCC-1, chloride channel accessory 1
External IDsOMIM:603906;MGI:1346342;HomoloGene:984;GeneCards:CLCA1;OMA:CLCA1 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for CLCA1
Genomic location for CLCA1
Band1p22.3Start86,468,368bp[1]
End86,500,259bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for CLCA1
Genomic location for CLCA1
Band3 H2|3 69.26 cMStart144,709,578bp[2]
End144,738,537bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • mucosa of ileum

  • mucosa of sigmoid colon

  • jejunal mucosa

  • mucosa of transverse colon

  • rectum

  • duodenum

  • cecum

  • appendix

  • pancreatic ductal cell

  • epithelium of colon
Top expressed in
  • left colon

  • intestinal villus

  • cervix

  • pyloric antrum

  • ileum

  • duodenum

  • mucous cell of stomach

  • crypt of lieberkuhn of small intestine

  • epithelium of small intestine

  • jejunum
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

1179

23844

Ensembl

ENSG00000016490

ENSMUSG00000028255

UniProt

A8K7I4

Q9D7Z6

RefSeq (mRNA)

NM_001285

NM_017474

RefSeq (protein)

NP_001276

NP_059502

Location (UCSC)Chr 1: 86.47 – 86.5 MbChr 3: 144.71 – 144.74 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Chloride channel accessory 1 is aprotein that in humans is encoded by theCLCA1gene.[5][6]

This gene encodes a member of the calcium sensitive chloride conductance protein family. To date, all members of this gene family map to the same region on chromosome 1p31-p22 and share a high degree of homology in size, sequence, and predicted structure, but differ significantly in their tissue distributions. The encoded protein is expressed as a precursor protein that is processed into two cell-surface-associated subunits, although the site at which the precursor is cleaved has not been precisely determined. The encoded protein may be involved in mediating calcium-activated chloride conductance in the intestine.[6] Protein structure prediction methods suggest the N-terminal region of CLCA1 protein is a zincmetalloprotease.[7]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000016490Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000028255Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Gruber AD, Elble RC, Ji HL, Schreur KD, Fuller CM, Pauli BU (Jan 1999)."Genomic cloning, molecular characterization, and functional analysis of human CLCA1, the first human member of the family of Ca2+-activated Cl channel proteins".Genomics.54 (2):200–14.doi:10.1006/geno.1998.5562.PMID 9828122.
  6. ^ab"Entrez Gene: CLCA1 chloride channel, calcium activated, family member 1".
  7. ^Pawłowski K, Lepistö M, Meinander N, et al. (2006). "Novel conserved hydrolase domain in the CLCA family of alleged calcium-activated chloride channels".Proteins.63 (3):424–39.doi:10.1002/prot.20887.PMID 16470849.S2CID 40041491.

Further reading

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External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

Ligand-gated
Voltage-gated
Constitutively active
Proton-gated
Voltage-gated
Calcium-activated
Inward-rectifier
Tandem pore domain
Voltage-gated
Miscellaneous
Cl:Chloride channel
H+:Proton channel
M+:CNG cation channel
M+:TRP cation channel
H2O (+solutes):Porin
Cytoplasm:Gap junction
By gating mechanism
Ion channel class
see alsodisorders


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