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CDH4

From Wikipedia, the free encyclopedia
Protein-coding gene in humans
CDH4
Identifiers
AliasesCDH4, CAD4, R-CAD, RCAD, cadherin 4
External IDsOMIM:603006;MGI:99218;HomoloGene:48044;GeneCards:CDH4;OMA:CDH4 - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for CDH4
Genomic location for CDH4
Band20q13.33Start61,252,261bp[1]
End61,940,617bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for CDH4
Genomic location for CDH4
Band2 H4|2 101.86 cMStart179,084,224bp[2]
End179,541,166bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • ventricular zone

  • ganglionic eminence

  • nucleus accumbens

  • temporal lobe

  • amygdala

  • caudate nucleus

  • anterior cingulate cortex

  • putamen

  • testicle

  • prefrontal cortex
Top expressed in
  • Bowman's capsule

  • saccule

  • anterior amygdaloid area

  • coelomic epithelium

  • epithelium of lens

  • glomerulus

  • gastrula

  • olfactory bulb

  • ganglionic eminence

  • otic vesicle
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

1002

12561

Ensembl

ENSG00000280641
ENSG00000179242

ENSMUSG00000000305

UniProt

P55283

P39038

RefSeq (mRNA)

NM_001794
NM_001252338
NM_001252339

NM_009867
NM_001316723

RefSeq (protein)

NP_001239267
NP_001239268
NP_001785

NP_001303652
NP_033997

Location (UCSC)Chr 20: 61.25 – 61.94 MbChr 2: 179.08 – 179.54 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Cadherin-4 is aprotein that in humans is encoded by theCDH4gene.[5][6][7]

This gene is a classicalcadherin from the cadherin superfamily. The encoded protein is a calcium-dependentcell-cell adhesionglycoprotein composed of five extracellular cadherin repeats, a transmembrane region and a highly conserved cytoplasmic tail. Based on studies in chicken and mouse, this cadherin is thought to play an important role during brain segmentation and neuronal outgrowth. In addition, a role in kidney and muscle development is indicated. Of particular interest are studies showing stable cis-heterodimers of cadherins 2 and 4 in cotransfected cell lines. Previously thought to interact in an exclusively homophilic manner, this is the first evidence of cadherin heterodimerization.[7]

Interactions

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Cadherin-4 has been shown tointeract with:

References

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  1. ^abcENSG00000179242 GRCh38: Ensembl release 89: ENSG00000280641, ENSG00000179242Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000000305Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Chalmers IJ, Hofler H, Atkinson MJ (Jun 1999). "Mapping of a cadherin gene cluster to a region of chromosome 5 subject to frequent allelic loss in carcinoma".Genomics.57 (1):160–3.doi:10.1006/geno.1998.5717.PMID 10191097.
  6. ^Kools P, Vanhalst K, van Roy F (Oct 1999). "Assignment of cadherin-4 (R-cadherin, CDH4) to human chromosome band 20q13.3".Cytogenet Cell Genet.86 (1):26–7.doi:10.1159/000015423.PMID 10516427.S2CID 27578498.
  7. ^ab"Entrez Gene: CDH4 cadherin 4, type 1, R-cadherin (retinal)".
  8. ^Brady-Kalnay SM, Mourton T, Nixon JP, Pietz GE, Kinch M, Chen H, et al. (1998)."Dynamic interaction of PTPmu with multiple cadherins in vivo".J Cell Biol.141 (1):287–96.doi:10.1083/jcb.141.1.287.PMC 2132733.PMID 9531566.

Further reading

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External links

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Calcium-independent
IgSF CAM
Integrins
Calcium-dependent
Cadherins
Classical
Desmosomal
Protocadherin
Unconventional/ungrouped
Selectins
Other


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