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CAMK

From Wikipedia, the free encyclopedia
Enzyme type
For the astronomical research centre in Poland, seeNicolaus Copernicus Astronomical Center of the Polish Academy of Sciences.
Ca2+/calmodulin-dependent protein kinase
Identifiers
EC no.2.7.11.17
CAS no.97350-82-8
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDBPDBePDBsum
Gene OntologyAmiGO /QuickGO
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PMCarticles
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NCBIproteins

CAMK, also written asCaMK orCCaMK, is an abbreviation for theCa2+/calmodulin-dependent protein kinase class of enzymes. CAMKs are activated by increases in the concentration of intracellular calcium ions (Ca2+) andcalmodulin. When activated, the enzymes transfer phosphates fromATP to definedserine orthreonine residues in other proteins, so they areserine/threonine-specific protein kinases. Activated CAMK is involved in thephosphorylation of transcription factors and therefore, in the regulation of expression of responding genes. CAMK also works to regulate the cell life cycle (i.e. programmed cell death), rearrangement of the cell's cytoskeletal network, and mechanisms involved in the learning and memory of an organism.[1]

Types

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There are 2 common types of CAM Kinase proteins: specialized and multi-functional CAM kinases.

Substrate-specific CAM Kinases
only have one target that they can phosphorylate, such as myosin light chain kinases.[1] This group of proteins includes CAMK III. More onCAMKIII can be found following this link.
Multi-functional CAM Kinases
have multiple targets they can phosphorylate and are found in processes including the secretion of neurotransmitters, metabolism of glycogen, and the regulation of various transcription factors.[1] CAMK II is the main protein in this subset. More onCAMKII can be found following this link.

Substrate phosphorylation

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Figure 1: Diagram of how CAMK II becomes active in the presence of calcium or calmodulin.

Once calcium concentrations in the cell rise, CAM kinases become saturated and bind the maximum of four calcium molecules.[1] This calcium saturation activates the kinase and allows it to undergo a conformational change which permits the kinase to bind to its phosphorylation target sites. CAMK removes a phosphate group from ATP, most typically using a Mg2+ ion, and adds it to the CAM protein, rendering it active.[2] The CAM Kinase contains a highly concentrated glycine loop where the gamma phosphate from the donor ATP molecule is easily able to bind to the enzyme which then utilizes the metal ion to facilitate a smooth phosphate transfer to the target protein.[3] This phosphate transfer then activates the kinase's target and completes the phosphorylation cycle.

Figure 1 shows how the presence of calcium or calmodulin allows for the activation of CAM kinases (CAMK II).

Figure 2: Graphic illustration of the crude domains of Calcium/calmodulin-dependent protein kinase 1[1]

Structure

[edit]

All kinases have a common structure of a catalytic core including an ATP binding site along with a larger substrate binding site.[4] The catalytic core is typically composed of β-strands with the substrate binding site composed of α-helices.[5] Most all CAM kinases includes a variety of domains, including: a catalytic domain, a regulatory domain, an association domain, and a calcium/calmodulin binding domain.[6]

CAMK I
as shown in Figure 2, has a double-lobed structure, consisting of a catalytic, substrate-binding domain and an autoinhibitory domain.[1] For the autoinhibitory domain to become functional, it must cause the protein to conform in such a way that this domain completely blocks the substrate domain from taking in new targets. Figure 2 goes into detail showing the structure and domains of CAMK I.
CAMK II
has a variety of different forms, with CAMK 2A being the most common, as shown in Figure 3. CAMK 2A has a ring-like crystalline structure, composed of smaller functional groups. These groups allow for the CaM-dependent phosphorylation of targets, but also allows the structure to autophosphorylate itself and become CaM-independent,[7] as seen in Figure 1. This means once the CAMK 2A protein is initially activated by calcium or calmodulin, it can, in turn, further activate itself, so it doesn't become inactive even when it is without calcium or calmodulin.
Figure 3: Image of CAMK 2A which is a form of Calcium/calmodulin-dependent kinase in its crystalline form.

Family members

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Members of the CAMK enzyme class include, but are not limited to:

Pseudokinases

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Pseudokinases arepseudoenzymes, proteins that resemble enzymes structurally, but lack catalytic activity.

Some of these pseudokinases that are related to the CAMK family include:

References

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  1. ^abcdefSwulius MT, Waxham MN (September 2008)."Ca(2+)/calmodulin-dependent protein kinases".Cellular and Molecular Life Sciences.65 (17):2637–57.doi:10.1007/s00018-008-8086-2.PMC 3617042.PMID 18463790.
  2. ^Adams JA (August 2001). "Kinetic and catalytic mechanisms of protein kinases".Chemical Reviews.101 (8):2271–90.doi:10.1021/cr000230w.PMID 11749373.
  3. ^Hemmer W, McGlone M, Tsigelny I, Taylor SS (July 1997)."Role of the glycine triad in the ATP-binding site of cAMP-dependent protein kinase".The Journal of Biological Chemistry.272 (27):16946–54.doi:10.1074/jbc.272.27.16946.PMID 9202006.S2CID 33795382.
  4. ^Hanks SK (2003)."Genomic analysis of the eukaryotic protein kinase superfamily: a perspective".Genome Biology.4 (5): 111.doi:10.1186/gb-2003-4-5-111.PMC 156577.PMID 12734000.
  5. ^Taylor SS, Yang J, Wu J, Haste NM, Radzio-Andzelm E, Anand G (March 2004). "PKA: a portrait of protein kinase dynamics".Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics.1697 (1–2):259–69.doi:10.1016/j.bbapap.2003.11.029.PMID 15023366.
  6. ^Hudmon A, Schulman H (2002-06-01). "Neuronal CA2+/calmodulin-dependent protein kinase II: the role of structure and autoregulation in cellular function".Annual Review of Biochemistry.71 (1):473–510.doi:10.1146/annurev.biochem.71.110601.135410.PMID 12045104.
  7. ^"CAMK2A calcium/calmodulin dependent protein kinase II alpha [Homo sapiens (human)] - Gene - NCBI".www.ncbi.nlm.nih.gov. Retrieved2020-03-20.
MAP
Calcium
G protein
Heterotrimeric
cAMP:
cGMP:
Monomeric
Cyclin
Lipid
Otherprotein kinase
Serine/threonine:
Tyrosine:
Serine/threonine/tyrosine
Arginine
Otherprotein phosphatase
Serine/threonine:
Tyrosine:
both:
Apoptosis
GTP-binding protein regulators
Other
Non-specific serine/threonine protein kinases (EC 2.7.11.1)
Pyruvate dehydrogenase kinase (EC 2.7.11.2)
Dephospho-(reductase kinase) kinase (EC 2.7.11.3)
3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) kinase (EC 2.7.11.4)
(isocitrate dehydrogenase (NADP+)) kinase (EC 2.7.11.5)
(tyrosine 3-monooxygenase) kinase (EC 2.7.11.6)
Myosin-heavy-chain kinase (EC 2.7.11.7)
Fas-activated serine/threonine kinase (EC 2.7.11.8)
Goodpasture-antigen-binding protein kinase (EC 2.7.11.9)
  • -
IκB kinase (EC 2.7.11.10)
cAMP-dependent protein kinase (EC 2.7.11.11)
cGMP-dependent protein kinase (EC 2.7.11.12)
Protein kinase C (EC 2.7.11.13)
Rhodopsin kinase (EC 2.7.11.14)
Beta adrenergic receptor kinase (EC 2.7.11.15)
G-protein coupled receptor kinases (EC 2.7.11.16)
Ca2+/calmodulin-dependent (EC 2.7.11.17)
Myosin light-chain kinase (EC 2.7.11.18)
Phosphorylase kinase (EC 2.7.11.19)
Elongation factor 2 kinase (EC 2.7.11.20)
Polo kinase (EC 2.7.11.21)
Serine/threonine-specific protein kinases (EC 2.7.11.21-EC 2.7.11.30)
Polo kinase (EC 2.7.11.21)
Cyclin-dependent kinase (EC 2.7.11.22)
(RNA-polymerase)-subunit kinase (EC 2.7.11.23)
Mitogen-activated protein kinase (EC 2.7.11.24)
MAP3K (EC 2.7.11.25)
Tau-protein kinase (EC 2.7.11.26)
(acetyl-CoA carboxylase) kinase (EC 2.7.11.27)
  • -
Tropomyosin kinase (EC 2.7.11.28)
  • -
Low-density-lipoprotein receptor kinase (EC 2.7.11.29)
  • -
Receptor protein serine/threonine kinase (EC 2.7.11.30)
MAP2K
Activity
Regulation
Classification
Kinetics
Types
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