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BCL11B

From Wikipedia, the free encyclopedia

Protein-coding gene in the species Homo sapiens
BCL11B
Identifiers
AliasesBCL11B, ATL1, ATL1-alpha, ATL1-beta, ATL1-delta, ATL1-gamma, CTIP-2, CTIP2, RIT1, ZNF856B, hRIT1-alpha, B-cell CLL/lymphoma 11B, IMD49, B cell CLL/lymphoma 11B, IDDFSTA, BAF complex component, BAF chromatin remodeling complex subunit SMARCM2
External IDsOMIM:606558;MGI:1929913;HomoloGene:10974;GeneCards:BCL11B;OMA:BCL11B - orthologs
Gene location (Human)
Chromosome 14 (human)
Chr.Chromosome 14 (human)[1]
Chromosome 14 (human)
Genomic location for BCL11B
Genomic location for BCL11B
Band14q32.2Start99,169,287bp[1]
End99,272,197bp[1]
Gene location (Mouse)
Chromosome 12 (mouse)
Chr.Chromosome 12 (mouse)[2]
Chromosome 12 (mouse)
Genomic location for BCL11B
Genomic location for BCL11B
Band12 F1|12 59.1 cMStart107,876,662bp[2]
End107,969,861bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • thymus

  • skin of thigh

  • nipple

  • skin of hip

  • vulva

  • buccal mucosa cell

  • secondary oocyte

  • skin of arm

  • ganglionic eminence

  • gums
Top expressed in
  • dorsal striatum

  • Rostral migratory stream

  • medial ganglionic eminence

  • Region I of hippocampus proper

  • olfactory tubercle

  • nucleus accumbens

  • thymus

  • Temporal Lobe

  • globus pallidus

  • Amygdala
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

64919

58208

Ensembl

ENSG00000127152

ENSMUSG00000048251

UniProt

Q9C0K0

Q99PV8

RefSeq (mRNA)

NM_001282237
NM_001282238
NM_022898
NM_138576

NM_001079883
NM_001286343
NM_021399

RefSeq (protein)

NP_001269166
NP_001269167
NP_075049
NP_612808

NP_001073352
NP_001273272
NP_067374

Location (UCSC)Chr 14: 99.17 – 99.27 MbChr 12: 107.88 – 107.97 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

B-cell lymphoma/leukemia 11B is aprotein that in humans is encoded by theBCL11Bgene.[5][6][7]

Gene location

[edit]

BCL11B is located onhumanchromosome 14p32.2.[8] Themouse analogue is called Rit1 or Bcl11b and is located onmousechromosome 12.[9]

Function

[edit]

This gene encodes a C2H2-typezinc finger protein and is closely related toBCL11A, a gene whose translocation may be associated with B-cell malignancies. The specific function of this gene has not yet been determined, but it could also be involved in some malignancies. Two alternatively spliced transcript variants, which encode distinct isoforms, have been reported.[7]

Research suggests that BCL11B is crucial forameloblasts (the cells that producetooth enamel) to form and work properly.[10]

Interactions

[edit]

BCL11B has been shown tointeract withCOUP-TFI.[11]

Pathology

[edit]

BCL11B is closely connected with immune regulation and for so its mutation can lead to aSCID phenotype. This so-called Immunodeficiency 49 (OMIM#617237) is classified as T-B+NK+SCID.[12] It is characterised by a lack ofT lymphocytes and its malfunctioning specifically inproliferative response. On the other hand,B cells andNK cells counts and functions are not impaired.[13] The symptoms of SCID caused by BCL11Bmutation - apart fromimmunity defects - typically includeteeth abnormalities,craniofacial dimorphism, different types ofdermatitis. As well theintellectual development is significantly impaired. The disease has a very early onset and the only known treatment ishematopoietic stem cell transplantation from a healthy donor.[14][13] The immunodeficiency has adominant negative mode ofinheritance as all so far described patients with it has been aftersequencing identified asheterozygotes in the BCL11Bgene.[13][14]

Research projects

[edit]

Amouse model based study showed, that Bcl11b also plays an important role in pathogenesis ofinflammatory bowel disease. Bcl11b gene knock-out in certainT cell population led to development ofIBD. The mechanisms behind are supposed to be reduced suppressor activity ofT regulatory cells and changes incytokine environment. Bcl11b is suspected to interact withFoxp3 andIL10gene promoters and thus impair its suppressive function in theintestines.[15]

Bcl11b (mouse analogue ofhuman BCL11B) has been proven to contribute tomalignant growth for example in case ofmouselymphomas. That is suspected to be caused by interaction withp53, a well-knowntumor suppressor gene.[9]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000127152Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000048251Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Satterwhite E, Sonoki T, Willis TG, Harder L, Nowak R, Arriola EL, et al. (December 2001)."The BCL11 gene family: involvement of BCL11A in lymphoid malignancies".Blood.98 (12):3413–20.doi:10.1182/blood.V98.12.3413.PMID 11719382.
  6. ^Topark-Ngarm A, Golonzhka O, Peterson VJ, Barrett B, Martinez B, Crofoot K, et al. (October 2006)."CTIP2 associates with the NuRD complex on the promoter of p57KIP2, a newly identified CTIP2 target gene".The Journal of Biological Chemistry.281 (43):32272–83.doi:10.1074/jbc.M602776200.PMC 2547407.PMID 16950772.
  7. ^ab"Entrez Gene: BCL11B B-cell CLL/lymphoma 11B (zinc finger protein)".
  8. ^"OMIM Entry - * 606558 - B-CELL CLL/LYMPHOMA 11B; BCL11B".www.omim.org. Retrieved2019-07-29.
  9. ^abWakabayashi Y, Inoue J, Takahashi Y, Matsuki A, Kosugi-Okano H, Shinbo T, et al. (February 2003). "Homozygous deletions and point mutations of the Rit1/Bcl11b gene in gamma-ray induced mouse thymic lymphomas".Biochemical and Biophysical Research Communications.301 (2):598–603.doi:10.1016/S0006-291X(02)03069-3.PMID 12565905.
  10. ^Golonzhka O, Metzger D, Bornert JM, Bay BK, Gross MK, Kioussi C, Leid M (March 2009)."Ctip2/Bcl11b controls ameloblast formation during mammalian odontogenesis".Proceedings of the National Academy of Sciences of the United States of America.106 (11):4278–83.Bibcode:2009PNAS..106.4278G.doi:10.1073/pnas.0900568106.PMC 2657370.PMID 19251658.*Lay summary in:"Gene could allow lab-grown teeth".BBC News. February 24, 2009.
  11. ^Avram D, Fields A, Pretty On Top K, Nevrivy DJ, Ishmael JE, Leid M (April 2000)."Isolation of a novel family of C(2)H(2) zinc finger proteins implicated in transcriptional repression mediated by chicken ovalbumin upstream promoter transcription factor (COUP-TF) orphan nuclear receptors".The Journal of Biological Chemistry.275 (14):10315–22.doi:10.1074/jbc.275.14.10315.PMC 2819356.PMID 10744719.
  12. ^Alt F (2018).Advances in immunology. Cambridge, MA: Academic Press.ISBN 978-0-12-815529-5.OCLC 1035016036.
  13. ^abcPunwani D, Zhang Y, Yu J, Cowan MJ, Rana S, Kwan A, et al. (December 2016)."Multisystem Anomalies in Severe Combined Immunodeficiency with Mutant BCL11B".The New England Journal of Medicine.375 (22):2165–2176.doi:10.1056/nejmoa1509164.PMC 5215776.PMID 27959755.
  14. ^abLessel D, Gehbauer C, Bramswig NC, Schluth-Bolard C, Venkataramanappa S, van Gassen KL, et al. (August 2018)."BCL11B mutations in patients affected by a neurodevelopmental disorder with reduced type 2 innate lymphoid cells".Brain.141 (8):2299–2311.doi:10.1093/brain/awy173.PMC 6061686.PMID 29985992.
  15. ^Vanvalkenburgh J, Albu DI, Bapanpally C, Casanova S, Califano D, Jones DM, et al. (September 2011)."Critical role of Bcl11b in suppressor function of T regulatory cells and prevention of inflammatory bowel disease".The Journal of Experimental Medicine.208 (10):2069–81.doi:10.1084/jem.20102683.PMC 3182057.PMID 21875956.

Further reading

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External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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