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Amidase

From Wikipedia, the free encyclopedia
amidase
Identifiers
EC no.3.5.1.4
CAS no.9012-56-0
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDBPDBePDBsum
Gene OntologyAmiGO /QuickGO
Search
PMCarticles
PubMedarticles
NCBIproteins
Protein family
Amidase
X-ray structure of native peptide amidase fromStenotrophomonas maltophilia at 1.4Å
Identifiers
SymbolAmidase
PfamPF01425
InterProIPR000120
PROSITEPDOC00494
SCOP21ocm /SCOPe /SUPFAM
OPM superfamily55
OPM protein1mt5
Membranome325
Available protein structures:
Pfam  structures /ECOD  
PDBRCSB PDB;PDBe;PDBj
PDBsumstructure summary

Inenzymology, anamidase (EC3.5.1.4,acylamidase,acylase (misleading),amidohydrolase (ambiguous),deaminase (ambiguous),fatty acylamidase,N-acetylaminohydrolase (ambiguous)) is anenzyme thatcatalyzes thehydrolysis of an amide. In this way, the twosubstrates of this enzyme are anamide andH2O, whereas its twoproducts are monocarboxylate andNH3.

This enzyme belongs to the family ofhydrolases, those acting on carbon-nitrogen bonds other than peptide bonds, specifically in linear amides. Thesystematic name of this enzyme class isacylamide amidohydrolase. Other names in common use includeacylamidase,acylase,amidohydrolase,deaminase,fatty acylamidase, andN-acetylaminohydrolase. This enzyme participates in 6metabolic pathways:urea cycle and metabolism of amino groups,phenylalanine metabolism,tryptophan metabolism,cyanoamino acid metabolism,benzoate degradation via coa ligation, andstyrene degradation.

Amidases contain aconserved stretch of approximately 130amino acids known as the ASsequence. They are widespread, being found in bothprokaryotes andeukaryotes. ASenzymescatalyse thehydrolysis ofamidebonds (CO-NH2), although the family has diverged widely with regard tosubstrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have ahighly conserved C-terminal region rich inserine and glycine residues, but devoid ofaspartic acid andhistidine residues, therefore they differ from classical serinehydrolases. These enzymes possess a unique, highlyconserved Ser-Ser-Lyscatalytic triad used for amide hydrolysis, although thecatalytic mechanism for acyl-enzymeintermediate formation can differ between enzymes.[1]

Examples of AS signature-containing enzymes include:

Structural studies

[edit]
This section needs to beupdated. Please help update this article to reflect recent events or newly available information.(May 2017)

As of late 2018, 162structures have been solved for this family, which can be accessed at thePfamArchived 2021-09-18 at theWayback Machine.

References

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  1. ^abValiña AL, Mazumder-Shivakumar D, Bruice TC (December 2004). "Probing the Ser-Ser-Lys catalytic triad mechanism of peptide amidase: computational studies of the ground state, transition state, and intermediate".Biochemistry.43 (50):15657–72.doi:10.1021/bi049025r.PMID 15595822.
  2. ^Wei BQ, Mikkelsen TS, McKinney MK, Lander ES, Cravatt BF (December 2006)."A second fatty acid amide hydrolase with variable distribution among placental mammals".J. Biol. Chem.281 (48):36569–78.doi:10.1074/jbc.M606646200.PMID 17015445.
  3. ^Shin S, Lee TH, Ha NC, Koo HM, Kim SY, Lee HS, Kim YS, Oh BH (June 2002)."Structure of malonamidase E2 reveals a novelSer-cisSer-Lys catalytic triad in a new serine hydrolase fold that is prevalent in nature".EMBO J.21 (11):2509–16.doi:10.1093/emboj/21.11.2509.PMC 126024.PMID 12032064.
  4. ^Kwak JH, Shin K, Woo JS, Kim MK, Kim SI, Eom SH, Hong KW (December 2002)."Expression, purification, and crystallization of glutamyl-tRNA(Gln) specific amidotransferase from Bacillus stearothermophilus".Mol. Cells.14 (3):374–81.doi:10.1016/S1016-8478(23)15118-1.PMID 12521300.

Further reading

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Hydrolases: carbon-nitrogen non-peptide (EC 3.5)
3.5.1: Linear amides /
Amidohydrolases
3.5.2: Cyclic amides/
Amidohydrolases
3.5.3: Linear amidines/
Ureohydrolases
3.5.4: Cyclic amidines/
Aminohydrolases
3.5.5: Nitriles/
Aminohydrolases
3.5.99: Other
Activity
Regulation
Classification
Kinetics
Types
Portal:
This article incorporates text from the public domainPfam andInterPro:IPR000120


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