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5-Fluorowillardiine

From Wikipedia, the free encyclopedia
5-Fluorowillardiine
Skeletal formula of (2S)-5-fluorowillardiine
Skeletal formula of (2S)-5-fluorowillardiine
Names
Other names
2-Amino-3-(5-fluoro-2,4-dioxopyrimidin-1-yl)propanoic acid
Identifiers
3D model (JSmol)
ChEBI
ChEMBL
ChemSpider
DrugBank
ECHA InfoCard100.162.280Edit this at Wikidata
UNII
  • InChI=1S/C7H8FN3O4/c8-3-1-11(2-4(9)6(13)14)7(15)10-5(3)12/h1,4H,2,9H2,(H,13,14)(H,10,12,15) checkY
    Key: DBWPFHJYSTVBCZ-UHFFFAOYSA-N checkY
  • InChI=1/C7H8FN3O4/c8-3-1-11(2-4(9)6(13)14)7(15)10-5(3)12/h1,4H,2,9H2,(H,13,14)(H,10,12,15)
    Key: DBWPFHJYSTVBCZ-UHFFFAOYAR
  • NC(CN1C=C(F)C(=O)N=C1O)C(O)=O
Properties
C7H8FN3O4
Molar mass217.156 g·mol−1
logP−1.168
Acidity (pKa)2.118
Basicity (pKb)11.879
Isoelectric point4.28
Except where otherwise noted, data are given for materials in theirstandard state (at 25 °C [77 °F], 100 kPa).
☒N verify (what is checkY☒N ?)
Chemical compound

5-Fluorowillardiine is a selectiveagonist for theAMPA receptor,[1][2][3] with only limited effects at thekainate receptor.[4] It is anexcitotoxicneurotoxin when usedin vivo and so is rarely used in intact animals, but it is widely used to selectively stimulate AMPA receptorsin vitro.[5][6][7] It is structurally similar to the compound willardiine, which is also an agonist for the AMPA and kainate receptors. Willardiine occurs naturally inMariosousa willardiana andAcacia sensu lato.[8][9]

The name is unusual as it has two successivei's. This is not atypo.

Toxicity

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(S)-5-Fluorowillardiine activity has been studiedin vitro in a variety of neural tissues. In mouse embryo hippocampal neurons, it was found to desensitize AMPA/kainate receptors with anEC50 of 1.5 μM – 7 times more potent than racemicAMPA (EC50 of 11 μM).[10] In another study, (S)-5-Fluorowillardiine showed biphasic dose-dependent neurotoxicity in cultural rodent cortical neurons, with EC50 values of 0.70 and 170 μM.[11] Whilein vivo research is sparse, a study in 5-day-old mice injected with the closely related AMPA/kainate agonist (S)-5-Bromowillardiine showed cortical and white matter damage. AMPA antagonists reduced the extent of the damage in a dose-dependent fashion.[12]

Applications in research

[edit]

Radiolabeled 5-fluorowillardiine has been used to study the distribution ofionotropic glutamate receptors in rodent brains.[13] It has also been used to evaluate the effects of variousallosteric modulators of the AMPA receptor.[14]

Chemistry

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Structure and activity

[edit]
Synthesis of 5-fluorowillardiine

5-Fluorowillardiine is derived from the nitrogenous baseuracil found inRNA. It is one member of a family of willardiine compounds, which share uracil or a substituted uracil as anamino acid side chain. 5-Fluorowillardiine exists as two distinctisomers:

  • (2R) orD
  • (2S) orL

The particularly high affinity of 5-fluorowillardiine for the AMPA receptor is attributed to its fluorine substituent at the 5-position of the ring, which is electron-withdrawing and small enough to not interfere with binding. By contrast, related willardiine derivatives with larger nonpolar electron withdrawing groups exhibit greater affinity for kainate receptors than 5-fluorowillardiine, and less affinity for AMPA receptors.[15]

The binding of 5-fluorowillardiine to the AMPA receptor is driven by entropy when its ring is uncharged. When the ring is deprotonated and has a negative charge, a favorable change in enthalpy primarily drives binding. Because the pKa values of halogenated willardiine derivates are approximately 8 (7.98 for 5-fluorowillardiine), binding is mostly driven by an increase in entropy at physiological pH.[16]

Synthesis

[edit]

The synthesis of 5-Fluorowillardiine may be achieved by using5-Fluorouracil as a nucleophile to open a specialized lactone in anSN2 reaction. Another straightforward approach is to perform aStrecker amino acid synthesis.[17][18]

References

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  1. ^Patneau, DK; Mayer, ML; Jane, DE; Watkins, JC (1992)."Activation and Desensitization of AMPA / Kainate Receptors by Novel Derivatives of Willardiine".Journal of Neuroscience.12 (2):595–606.doi:10.1523/JNEUROSCI.12-02-00595.1992.PMC 6575614.PMID 1371315.
  2. ^Hawkins, LM; Beaver, KM; Jane, DE; Taylor, PM; Sunter, DC; Roberts, PJ (1995)."Characterization of the pharmacology and regional distribution of (S)-3H-5-fluorowillardiine binding in rat brain".British Journal of Pharmacology.116 (3):2033–9.doi:10.1111/j.1476-5381.1995.tb16408.x.PMC 1908955.PMID 8640342.
  3. ^Lunn, ML; Ganakas, AM; Mercer, LD; Lawrence, AJ; Beart, PM (1996). "Localisation and properties of AMPA-insensitive kainate sites: receptor autoradiography and gene expression in rat brain".Neuroscience Letters.204 (1–2):121–4.doi:10.1016/0304-3940(96)12335-1.PMID 8929993.S2CID 36885666.
  4. ^Larm, JA; Cheung, NS; Beart, PM (1996). "(S)-5-fluorowillardiine-mediated neurotoxicity in cultured murine cortical neurones occurs via AMPA and kainate receptors".European Journal of Pharmacology.314 (1–2):249–54.doi:10.1016/S0014-2999(96)00633-4.PMID 8957243.
  5. ^Jensen, RJ (1999). "Responses of directionally selective retinal ganglion cells to activation of AMPA glutamate receptors".Visual Neuroscience.16 (2):205–19.doi:10.1017/s0952523899162023.PMID 10367956.S2CID 42955027.
  6. ^Olivera, S; Rodriguez-Ithurralde, D; Henley, JM (2001)."Regional localization and developmental profile of acetylcholinesterase-evoked increases in3H-5-fluorowillardiine binding to AMPA receptors in rat brain".British Journal of Pharmacology.133 (7):1055–62.doi:10.1038/sj.bjp.0704167.PMC 1572873.PMID 11487516.
  7. ^Kessler, M; Arai, AC (2006). "Use of3H fluorowillardiine to study properties of AMPA receptor allosteric modulators".Brain Research.1076 (1):25–41.doi:10.1016/j.brainres.2005.09.024.PMID 16256076.S2CID 28267484.
  8. ^Klaassen, C. D.; John Barr Watkins (2010)."Toxic Agents"(PDF).Casarett and Doull's essentials of toxicology. USA: McGraw-Hill Prof Med/Tech. p. 374.ISBN 978-0-07-176651-7.
  9. ^Atta-ur- Rahman (2000)."Interference of Alkaloids"(PDF).Bioactive Natural Products (Part B), Part 2. Amsterdam: Alsevier Science B. V. p. 72.ISBN 9780080542010.
  10. ^Patneau, DK; Mayer, ML; Jane, DE; Watkins, JC (1 February 1992)."Activation and desensitization of AMPA/kainate receptors by novel derivatives of willardiine".The Journal of Neuroscience.12 (2):595–606.doi:10.1523/JNEUROSCI.12-02-00595.1992.PMC 6575614.PMID 1371315.
  11. ^Larm, Jari A.; Cheung, Nam Sang; Beart, Philip M. (October 1996). "(S)-5-Fluorowillardiine-mediated neurotoxicity in cultured murine cortical neurones occurs via AMPA and kainate receptors".European Journal of Pharmacology.314 (1–2):249–254.doi:10.1016/S0014-2999(96)00633-4.PMID 8957243.
  12. ^Gressens, Pierre; Spedding, Michael; Gigler, Gabor; Kertesz, Szabolcs; Villa, Pascal; Medja, Fadia; Williamson, Toni; Kapus, Gabor; Levay, Gyorgy; Szenasi, Gabor; Barkoczy, Jozsef; Harsing, Laszlo G. (September 2005). "The effects of AMPA receptor antagonists in models of stroke and neurodegeneration".European Journal of Pharmacology.519 (1–2):58–67.doi:10.1016/j.ejphar.2005.06.031.PMID 16112106.
  13. ^Hawkins, L.M.; Beaver, K.M.; Jane, D.E.; Taylor, P.M.; Sunter, D.C.; Roberts, P.J. (October 1995)."Characterization of the pharmacology and regional distribution of (S)-[3H]-5-fluorowillardiine binding in rat brain".British Journal of Pharmacology.116 (3):2033–2039.doi:10.1111/j.1476-5381.1995.tb16408.x.PMC 1908955.PMID 8640342.
  14. ^Kessler, Markus; Arai, Amy C. (March 2006). "Use of [3H]fluorowillardiine to study properties of AMPA receptor allosteric modulators".Brain Research.1076 (1):25–41.doi:10.1016/j.brainres.2005.09.024.PMID 16256076.S2CID 28267484.
  15. ^Jane, David E.; Hoo, Ken; Kamboj, Raj; Deverill, Michele; Bleakman, David; Mandelzys, Allan (October 1997). "Synthesis of Willardiine and 6-Azawillardiine Analogs: Pharmacological Characterization on Cloned Homomeric Human AMPA and Kainate Receptor Subtypes".Journal of Medicinal Chemistry.40 (22):3645–3650.doi:10.1021/jm9702387.PMID 9357531.
  16. ^Martinez, Madeline; Ahmed, Ahmed H.; Loh, Adrienne P.; Oswald, Robert E. (5 June 2014)."Thermodynamics and Mechanism of the Interaction of Willardiine Partial Agonists with a Glutamate Receptor: Implications for Drug Development".Biochemistry.53 (23):3790–3795.doi:10.1021/bi500511m.PMC 4215890.PMID 24850223.
  17. ^Jane, David E.; Hoo, Ken; Kamboj, Raj; Deverill, Michele; Bleakman, David; Mandelzys, Allan (October 1997). "Synthesis of Willardiine and 6-Azawillardiine Analogs: Pharmacological Characterization on Cloned Homomeric Human AMPA and Kainate Receptor Subtypes".Journal of Medicinal Chemistry.40 (22):3645–3650.doi:10.1021/jm9702387.PMID 9357531.
  18. ^Dewar, J. H.; Shaw, G. (1962). "110. Purines, pyrimidines, and imidazoles. Part XVII. A synthesis of willardiine".Journal of the Chemical Society (Resumed): 583.doi:10.1039/JR9620000583.

External links

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AMPARTooltip α-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptor
KARTooltip Kainate receptor
NMDARTooltip N-Methyl-D-aspartate receptor
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