The2003–04 UEFA Champions League qualifying rounds decided 16 of the 32 teams which played in the group stage.All times areCEST (UTC+2).
| Key to colours |
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| Qualify for thegroup stage |
| Eliminated in the Third qualifying round; Advanced to theUEFA Cup first round |
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The draw for this round was performed on 20 June 2003 inNyon,Switzerland.
| Seeded | Unseeded |
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The first legs were played on 16 July, and the second legs were played on 23 July 2003.
| Team 1 | Agg. Tooltip Aggregate score | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
Pyunik  | 2–1 |  KR | 1–0 | 1–1 |
Sheriff Tiraspol  | 2–1 |  Flora | 1–0 | 1–1 |
HB  | 1–5 |  Kaunas | 0–1 | 1–4 |
BATE Borisov  | 1–3 |  Bohemians | 1–0 | 0–3 |
Vardar  | 4–2 |  Barry Town | 3–0 | 1–2 |
Grevenmacher  | 0–2 |  Leotar | 0–0 | 0–2 |
Glentoran  | 0–1 |  HJK | 0–0 | 0–1 |
Sliema Wanderers  | 3–3 (a) |  Skonto | 2–0 | 1–3 |
Omonia  | 2–1 |  Irtysh | 0–0 | 2–1 |
Dinamo Tbilisi  | 3–3 (2–4p) |  Tirana | 3–0 | 0–3 (a.e.t.) |
| KR | 1–1 | Pyunik |
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| Report |
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Pyunik won 2–1 on aggregate.
| Flora | 1–1 | Sheriff Tiraspol |
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| Report |
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Sheriff Tiraspol won 2–1 on aggregate.
Kaunas won 5–1 on aggregate.
Bohemians won 3–1 on aggregate.
Vardar won 4–2 on aggregate.
| Leotar | 2–0 | Grevenmacher |
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| Report |
Leotar won 2–0 on aggregate.
HJK won 1–0 on aggregate.
| Sliema Wanderers | 2–0 | Skonto |
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| Report |
| Skonto | 3–1 | Sliema Wanderers |
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| Report |
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3–3 on aggregate; Sliema Wanderers won on away goals.
Omonia won 2–1 on aggregate.
| Dinamo Tbilisi | 3–0 | Tirana |
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| Report |
3–3 on aggregate; Tirana won 4–2 on penalties.
The draw for this round was performed on 20 June 2003 inNyon,Switzerland.
The first legs were played on 30 July, and the second legs were played on 6 August 2003.
| Team 1 | Agg. Tooltip Aggregate score | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
MTK Hungária  | 3–2 | HJK | 3–1 | 0–1 |
| Pyunik | 0–3 |  CSKA Sofia | 0–2 | 0–1 |
| Kaunas | 0–5 |  Celtic | 0–4 | 0–1 |
| Leotar | 1–4 |  Slavia Prague | 1–2 | 0–2 |
| Sheriff Tiraspol | 0–2 |  Shakhtar Donetsk | 0–0 | 0–2 |
Žilina  | 2–1 |  Maccabi Tel Aviv | 1–0 | 1–1 |
| Bohemians | 0–5 |  Rosenborg | 0–1 | 0–4 |
Maribor  | 2–3 |  Dinamo Zagreb | 1–1 | 1–2 |
CSKA Moscow  | 2–3 | Vardar | 1–2 | 1–1 |
Rapid București  | 2–3 |  Anderlecht | 0–0 | 2–3 |
Partizan  | 3–3 (a) |  Djurgårdens IF | 1–1 | 2–2 |
Wisła Kraków  | 7–4 | Omonia | 5–2 | 2–2 |
Copenhagen  | 10–1 | Sliema Wanderers | 4–1 | 6–0 |
| Tirana | 2–7 |  GAK | 1–5 | 1–2 |
| MTK Hungária | 3–1 | HJK |
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| Report |
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| HJK | 1–0 | MTK Hungária |
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| Report |
MTK Hungária won 3–2 on aggregate.
| CSKA Sofia | 1–0 | Pyunik |
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| Report |
CSKA Sofia won 3–0 on aggregate.
Celtic won 5–0 on aggregate.
Slavia Prague won 4–1 on aggregate.
Shakhtar Donetsk won 2–0 on aggregate.
| Maccabi Tel Aviv | 1–1 | Žilina |
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| Report |
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Žilina won 2–1 on aggregate.
Rosenborg won 5–0 on aggregate.
| Maribor | 1–1 | Dinamo Zagreb |
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| Report |
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Dinamo Zagreb won 3–2 on aggregate.
| CSKA Moscow | 1–2 | Vardar |
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| Report |
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| Vardar | 1–1 | CSKA Moscow |
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| Report |
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Vardar won 3–2 on aggregate.
| Anderlecht | 3–2 | Rapid București |
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| Report |
Anderlecht won 3–2 on aggregate.
| Partizan | 1–1 | Djurgårdens IF |
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| Report |
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3–3 on aggregate; Partizan won on away goals.
| Wisła Kraków | 5–2 |  Omonia |
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| Report |
| Omonia | 2–2 | Wisła Kraków |
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| Report |
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Wisła Kraków won 7–4 on aggregate.
Copenhagen won 10–1 on aggregate.
GAK won 7–2 on aggregate.
The draw for this round was performed on 25 July 2003 inNyon,Switzerland.
The first legs were played on 12 and 13 August, and the second legs were played on 26 and 27 August 2003.
| Team 1 | Agg. Tooltip Aggregate score | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Vardar | 4–5 | Sparta Prague | 2–3 | 2–2 |
| MTK Hungária | 0–5 | Celtic | 0–4 | 0–1 |
| Rangers | 3–2 | Copenhagen | 1–1 | 2–1 |
| Austria Wien | 0–1 |  Marseille | 0–1 | 0–0 |
| Club Brugge | 3–3 (4–2p) |  Borussia Dortmund | 2–1 | 1–2 (a.e.t.) |
| Shakhtar Donetsk | 2–3 | Lokomotiv Moscow | 1–0 | 1–3 |
Lazio  | 4–1 |  Benfica | 3–1 | 1–0 |
| Dynamo Kyiv | 5–1 | Dinamo Zagreb | 3–1 | 2–0 |
| Rosenborg | 0–1 |  Deportivo La Coruña | 0–0 | 0–1 |
Grasshopper  | 2–3 |  AEK Athens | 1–0 | 1–3 |
| Žilina | 0–5 |  Chelsea | 0–2 | 0–3 |
| Celta Vigo | 3–2 | Slavia Prague | 3–0 | 0–2 |
| Partizan | 1–1 (4–3p) | Newcastle United | 0–1 | 1–0 (a.e.t.) |
Galatasaray  | 6–0 | CSKA Sofia | 3–0 | 3–0 |
| Anderlecht | 4–1 | Wisła Kraków | 3–1 | 1–0 |
| GAK | 2–3 |  Ajax | 1–1 | 1–2 (a.e.t.) |
| Vardar | 2–3 | Sparta Prague |
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| Report |
| Sparta Prague | 2–2 | Vardar |
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| Report |
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Sparta Prague won 5–4 on aggregate.
Celtic won 5–0 on aggregate.
Rangers won 3–2 on aggregate.
Marseille won 1–0 on aggregate.
3–3 on aggregate; Club Brugge won 4–2 on penalties.
| Lokomotiv Moscow | 3–1 |  Shakhtar Donetsk |
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| Report |
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Lokomotiv Moscow won 3–2 on aggregate.
Lazio won 4–1 on aggregate.
Dynamo Kyiv won 5–1 on aggregate.
Deportivo La Coruña won 1–0 on aggregate.
| AEK Athens | 3–1 | Grasshopper |
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| Report |
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AEK Athens won 3–2 on aggregate.
Chelsea won 5–0 on aggregate.
Celta Vigo won 3–2 on aggregate.
1–1 on aggregate; Partizan won 4–3 on penalties.
| Galatasaray | 3–0 | CSKA Sofia |
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| Report |
| CSKA Sofia | 0–3 | Galatasaray |
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| Report |
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Galatasaray won 6–0 on aggregate.
Anderlecht won 4–1 on aggregate.
Ajax won 3–2 on aggregate.
