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SPEG

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

For the botanist with taxonomic author abbreviation Speg., seeCarlo Luigi Spegazzini.
SPEG
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1U2H

Identifiers
AliasesSPEG, APEG-1, APEG1, BPEG, SPEGalpha, SPEGbeta, CNM5, SPEG complex locus, MYLK6, striated muscle enriched protein kinase
External IDsOMIM:615950;MGI:109282;HomoloGene:55619;GeneCards:SPEG;OMA:SPEG - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for SPEG
Genomic location for SPEG
Band2q35Start219,434,843bp[1]
End219,493,629bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for SPEG
Genomic location for SPEG
Band1 C4|1 38.88 cMStart75,375,297bp[2]
End75,432,320bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • popliteal artery

  • tibial arteries

  • right coronary artery

  • Descending thoracic aorta

  • ascending aorta

  • gastric mucosa

  • body of uterus

  • left uterine tube

  • muscle layer of sigmoid colon

  • left coronary artery
Top expressed in
  • ascending aorta

  • aortic valve

  • external carotid artery

  • internal carotid artery

  • tunica media of zone of aorta

  • muscle of thigh

  • Epithelium of choroid plexus

  • right ventricle

  • triceps brachii muscle

  • superior surface of tongue
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

10290

11790

Ensembl

ENSG00000072195

ENSMUSG00000026207

UniProt

Q15772

Q62407

RefSeq (mRNA)

NM_001173476
NM_005876

NM_001085370
NM_001085371
NM_001173477
NM_007463

RefSeq (protein)

NP_001166947
NP_005867

NP_001078839
NP_001078840
NP_001166948
NP_031489

Location (UCSC)Chr 2: 219.43 – 219.49 MbChr 1: 75.38 – 75.43 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Striated muscle preferentially expressed protein kinase, in the human is encoded by theSPEG gene, a member of themyosin light-chain kinase protein family.[5][6][7] SPEG is involved in the development of themuscle cellcytoskeleton,[5] and the expression of this gene has important roles in the development ofskeletal muscles, and their maintenance and function.[7] Mutations are associated withcentronuclear myopathies a group of congenital disorders where thecell nuclei are abnormally centrally placed.[8]

In the mouse this gene is calledSPEG complex locus.[9]Expression of this gene is thought to serve as a marker for differentiatedvascular smooth muscle cells which may have a role in regulating growth and differentiation of this cell type. The encoded protein is highly similar to the corresponding rat and mouse proteins. Multiple alternatively splicedtranscript variants have been found for this gene, but the full-length nature of only one variant has been defined.

Mouse Mutant Alleles for Speg
Marker Symbol for Mouse Gene. This symbol is assigned to the genomic locus by theMGISpeg
Mutant Mouse Embryonic Stem Cell Clones. These are the known targeted mutations for this gene in a mouse.Spegtm1a(KOMP)Wtsi
Example structure of targeted conditional mutant allele for this gene
Molecular structure of Speg region with inserted mutation sequence
Molecular structure of Speg region with inserted mutation sequence
These Mutant ES Cells can be studied directly or used to generate mice with this gene knocked out. Study of these mice can shed light on the function of Speg:

seeKnockout mouse

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000072195Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000026207Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"SPEG striated muscle enriched protein kinase [Homo sapiens (human)] - Gene - NCBI".www.ncbi.nlm.nih.gov. Retrieved6 June 2021.
  6. ^"SPEG - Striated muscle preferentially expressed protein kinase - Homo sapiens (Human) - SPEG gene & protein".www.uniprot.org. Retrieved6 June 2021.
  7. ^abLuo S, Rosen SM, Li Q, Agrawal PB (May 2021)."Striated Preferentially Expressed Protein Kinase (SPEG) in Muscle Development, Function, and Disease".International Journal of Molecular Sciences.22 (11): 5732.doi:10.3390/ijms22115732.PMC 8199188.PMID 34072258.
  8. ^Zhang G, Xu M, Huang T, Lin W, Chen J, Chen W, et al. (April 2021)."Clinical and genetic analysis of a case with centronuclear myopathy caused by SPEG gene mutation: a case report and literature review".BMC Pediatrics.21 (1) 209.doi:10.1186/s12887-021-02656-6.PMC 8082920.PMID 33926407.
  9. ^"Speg SPEG complex locus [Mus musculus (house mouse)] - Gene - NCBI".www.ncbi.nlm.nih.gov. Retrieved6 June 2021.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1u2h: X-ray Structure of the N-terminally truncated human APEP-1
    1u2h: X-ray Structure of the N-terminally truncated human APEP-1
Non-specific serine/threonine protein kinases (EC 2.7.11.1)
Pyruvate dehydrogenase kinase (EC 2.7.11.2)
Dephospho-(reductase kinase) kinase (EC 2.7.11.3)
3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) kinase (EC 2.7.11.4)
(isocitrate dehydrogenase (NADP+)) kinase (EC 2.7.11.5)
(tyrosine 3-monooxygenase) kinase (EC 2.7.11.6)
Myosin-heavy-chain kinase (EC 2.7.11.7)
Fas-activated serine/threonine kinase (EC 2.7.11.8)
Goodpasture-antigen-binding protein kinase (EC 2.7.11.9)
  • -
IκB kinase (EC 2.7.11.10)
cAMP-dependent protein kinase (EC 2.7.11.11)
cGMP-dependent protein kinase (EC 2.7.11.12)
Protein kinase C (EC 2.7.11.13)
Rhodopsin kinase (EC 2.7.11.14)
Beta adrenergic receptor kinase (EC 2.7.11.15)
G-protein coupled receptor kinases (EC 2.7.11.16)
Ca2+/calmodulin-dependent (EC 2.7.11.17)
Myosin light-chain kinase (EC 2.7.11.18)
Phosphorylase kinase (EC 2.7.11.19)
Elongation factor 2 kinase (EC 2.7.11.20)
Polo kinase (EC 2.7.11.21)
Serine/threonine-specific protein kinases (EC 2.7.11.21-EC 2.7.11.30)
Polo kinase (EC 2.7.11.21)
Cyclin-dependent kinase (EC 2.7.11.22)
(RNA-polymerase)-subunit kinase (EC 2.7.11.23)
Mitogen-activated protein kinase (EC 2.7.11.24)
MAP3K (EC 2.7.11.25)
Tau-protein kinase (EC 2.7.11.26)
(acetyl-CoA carboxylase) kinase (EC 2.7.11.27)
  • -
Tropomyosin kinase (EC 2.7.11.28)
  • -
Low-density-lipoprotein receptor kinase (EC 2.7.11.29)
  • -
Receptor protein serine/threonine kinase (EC 2.7.11.30)
MAP2K
Activity
Regulation
Classification
Kinetics
Types
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