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PFKL

From Wikipedia, the free encyclopedia
Mammalian protein found in Homo sapiens
PFKL
Identifiers
AliasesPFKL, ATP-PFK, PFK-B, PFK-L, phosphofructokinase, liver type
External IDsOMIM:171860;MGI:97547;HomoloGene:55668;GeneCards:PFKL;OMA:PFKL - orthologs
Gene location (Human)
Chromosome 21 (human)
Chr.Chromosome 21 (human)[1]
Chromosome 21 (human)
Genomic location for PFKL
Genomic location for PFKL
Band21q22.3Start44,300,051bp[1]
End44,327,376bp[1]
Gene location (Mouse)
Chromosome 10 (mouse)
Chr.Chromosome 10 (mouse)[2]
Chromosome 10 (mouse)
Genomic location for PFKL
Genomic location for PFKL
Band10 C1|10 39.72 cMStart77,822,781bp[2]
End77,845,917bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • mucosa of transverse colon

  • tibial nerve

  • C1 segment

  • right frontal lobe

  • skin of abdomen

  • body of stomach

  • skin of leg

  • canal of the cervix

  • right uterine tube

  • ectocervix
Top expressed in
  • neural layer of retina

  • dentate gyrus of hippocampal formation granule cell

  • epiblast

  • vestibular membrane of cochlear duct

  • perirhinal cortex

  • otic vesicle

  • brown adipose tissue

  • primitive streak

  • CA3 field

  • entorhinal cortex
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5211

18641

Ensembl

ENSG00000141959

ENSMUSG00000020277

UniProt

P17858
Q7L2M7

P12382

RefSeq (mRNA)

NM_001002021
NM_002626

NM_008826
NM_001358793

RefSeq (protein)

NP_001002021
NP_002617
NP_001002021.2
NP_002617.3

NP_032852
NP_001345722

Location (UCSC)Chr 21: 44.3 – 44.33 MbChr 10: 77.82 – 77.85 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

6-phosphofructokinase, liver type (PFKL) is anenzyme that in humans is encoded by thePFKLgene on chromosome 21.[5] This gene encodes theliver (L) isoform ofphosphofructokinase-1, an enzyme thatcatalyzes the conversion ofD-fructose 6-phosphate toD-fructose 1,6-bisphosphate, which is a key step inglucosemetabolism (glycolysis). This enzyme is atetramer that may be composed of different subunits encoded by distinct genes in different tissues.Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014][5]

Structure

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Gene

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The PFKL mRNA sequence includes 55nucleotides at the5' and 515 nucleotides at the3'noncoding regions, as well as 2,337 nucleotides in the coding region, encoding 779amino acids. This coding region only shares a 68% similarity between PFKL and the muscle-typePFKM.[6]

Protein

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This 80-kDa protein is one of three subunit types that comprise the five tetrameric PFKisozymes. The liver PFK (PFK-5) contains solely PFKL, while theerythrocyte PFK includes five isozymes composed of different combinations of PFKL and the second subunit type, PFKM.[7][8] The muscle isozyme (PFK-1) is composed solely of PFKM.[7][9][10] These subunits evolved from a commonprokaryotic ancestor viagene duplication and mutation events. Generally, theN-terminal of the subunits carries out their catalytic activity while theC-terminal containsallostericligand binding sites[11]

Function

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This gene encodes one of three protein subunits of PFK, which are expressed and combined to form the tetrameric PFK in a tissue-specific manner. As a PFK subunit, PFKL is involved in catalyzing thephosphorylation of fructose 6-phosphate to fructose 1,6-bisphosphate. This irreversible reaction serves as the majorrate-limiting step of glycolysis.[7][10][11][12] Notably,knockdown ofPFKL has been shown to impair glycolysis and promote metabolism via thepentose phosphate pathway. Moreover, PFKL regulatesNADPH oxidase activity through the pentose phosphate pathway and according toNADPH levels.[12]

PFKL has also been detected inleukocytes,kidney, andbrain.[9]

Clinical significance

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As the erythrocyte PFK is composed of both PFKL and PFKM, thisheterogeneic composition is attributed with the differential PFK activity and organ involvement observed in some inherited PFK deficiency states in whichmyopathy orhemolysis or both can occur, such asglycogenosis type VII (Tarui disease).[7][8]

Overexpression of PFKL has been associated withDown's syndrome (DS) erythrocytes andfibroblasts and attributed withbiochemical changes in PFK that enhance its glycolytic function. Moreover, thePFKL gene maps to the triplicated region of chromosome 21 responsible for DS, indicating that this gene, too, has been triplicated.[13]

Interactive pathway map

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Click on genes, proteins and metabolites below to link to respective articles.[§ 1]

  1. ^The interactive pathway map can be edited at WikiPathways:"GlycolysisGluconeogenesis_WP534".

See also

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References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000141959Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000020277Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: PFKL phosphofructokinase, liver".
  6. ^Levanon D, Danciger E, Dafni N, Bernstein Y, Elson A, Moens W, Brandeis M, Groner Y (December 1989). "The primary structure of human liver type phosphofructokinase and its comparison with other types of PFK".DNA.8 (10):733–43.doi:10.1089/dna.1989.8.733.PMID 2533063.
  7. ^abcdVora S, Seaman C, Durham S, Piomelli S (January 1980)."Isozymes of human phosphofructokinase: identification and subunit structural characterization of a new system".Proceedings of the National Academy of Sciences of the United States of America.77 (1):62–6.Bibcode:1980PNAS...77...62V.doi:10.1073/pnas.77.1.62.PMC 348208.PMID 6444721.
  8. ^abVora S, Davidson M, Seaman C, Miranda AF, Noble NA, Tanaka KR, Frenkel EP, Dimauro S (December 1983)."Heterogeneity of the molecular lesions in inherited phosphofructokinase deficiency".The Journal of Clinical Investigation.72 (6):1995–2006.doi:10.1172/JCI111164.PMC 437040.PMID 6227635.
  9. ^abKoster JF, Slee RG, Van Berkel TJ (April 1980). "Isoenzymes of human phosphofructokinase".Clinica Chimica Acta; International Journal of Clinical Chemistry.103 (2):169–73.doi:10.1016/0009-8981(80)90210-7.PMID 6445244.
  10. ^abMusumeci O, Bruno C, Mongini T, Rodolico C, Aguennouz M, Barca E, Amati A, Cassandrini D, Serlenga L, Vita G, Toscano A (April 2012). "Clinical features and new molecular findings in muscle phosphofructokinase deficiency (GSD type VII)".Neuromuscular Disorders.22 (4):325–30.doi:10.1016/j.nmd.2011.10.022.PMID 22133655.S2CID 20133199.
  11. ^abBrüser A, Kirchberger J, Kloos M, Sträter N, Schöneberg T (May 2012)."Functional linkage of adenine nucleotide binding sites in mammalian muscle 6-phosphofructokinase".The Journal of Biological Chemistry.287 (21):17546–53.doi:10.1074/jbc.M112.347153.PMC 3366854.PMID 22474333.
  12. ^abGraham DB, Becker CE, Doan A, Goel G, Villablanca EJ, Knights D, Mok A, Ng AC, Doench JG, Root DE, Clish CB, Xavier RJ (21 July 2015)."Functional genomics identifies negative regulatory nodes controlling phagocyte oxidative burst".Nature Communications.6 7838.Bibcode:2015NatCo...6.7838G.doi:10.1038/ncomms8838.PMC 4518307.PMID 26194095.
  13. ^Elson A, Bernstein Y, Degani H, Levanon D, Ben-Hur H, Groner Y (March 1992). "Gene dosage and Down's syndrome: metabolic and enzymatic changes in PC12 cells overexpressing transfected human liver-type phosphofructokinase".Somatic Cell and Molecular Genetics.18 (2):143–61.doi:10.1007/bf01233161.PMID 1533471.S2CID 38259672.

Further reading

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Transferases:phosphorus-containing groups (EC 2.7)
2.7.1–2.7.4:
phosphotransferase/kinase
(PO4)
2.7.1:OH acceptor
2.7.2:COOH acceptor
2.7.3:N acceptor
2.7.4:PO4 acceptor
2.7.6:diphosphotransferase
(P2O7)
2.7.7:nucleotidyltransferase
(PO4-nucleoside)
Polymerase
DNA polymerase
DNA-directed DNA polymerase
I/A
γ
θ
ν
T7
Taq
II/B
α
δ
ε
ζ
Pfu
III/C
IV/X
β
λ
μ
TDT
V/Y
η
ι
κ
RNA-directed DNA polymerase
Reverse transcriptase
Telomerase
RNA polymerase
Phosphorolytic
3′ to 5′exoribonuclease
Nucleotidyltransferase
Guanylyltransferase
Other
2.7.8: miscellaneous
Phosphatidyltransferases
Glycosyl-1-phosphotransferase
2.7.10–2.7.13:protein kinase
(PO4; protein acceptor)
2.7.10:protein-tyrosine
2.7.11:protein-serine/threonine
2.7.12: protein-dual-specificity
2.7.13: protein-histidine
Glycolysis
Gluconeogenesis only
tooxaloacetate:
fromlactate (Cori cycle):
fromalanine (Alanine cycle):
fromglycerol:
Regulatory

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