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MYB (gene)

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

Protein domain
Myb-like DNA-binding domain
Identifiers
SymbolMyb_DNA-binding
PfamPF00249
InterProIPR001005
PROSITEPDOC00037
CATH1irz
SCOP21irz /SCOPe /SUPFAM
CDDcd00167
Available protein structures:
PDB  IPR001005PF00249 (ECOD;PDBsum)  
AlphaFold
MYB
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1GUU,1GV2,1GV5,1GVD,1H88,1H89,1IDY,1IDZ,1MBE,1MBF,1MBG,1MBH,1MBJ,1MBK,1MSE,1MSF,1SB0,2AGH

Identifiers
AliasesMYB, Cmyb, c-myb, c-myb_CDS, efg, MYB proto-oncogene, transcription factor
External IDsOMIM:189990;MGI:97249;HomoloGene:31311;GeneCards:MYB;OMA:MYB - orthologs
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]
Chromosome 6 (human)
Genomic location for MYB
Genomic location for MYB
Band6q23.3Start135,181,308bp[1]
End135,219,173bp[1]
Gene location (Mouse)
Chromosome 10 (mouse)
Chr.Chromosome 10 (mouse)[2]
Chromosome 10 (mouse)
Genomic location for MYB
Genomic location for MYB
Band10 A3|10 9.75 cMStart21,000,834bp[2]
End21,036,883bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • mucosa of sigmoid colon

  • bronchial epithelial cell

  • trabecular bone

  • bone marrow

  • thymus

  • rectum

  • buccal mucosa cell

  • bone marrow cell

  • mucosa of transverse colon

  • right uterine tube
Top expressed in
  • thymus

  • tibiofemoral joint

  • left colon

  • fetal liver hematopoietic progenitor cell

  • crypt of lieberkuhn of small intestine

  • Paneth cell

  • hair follicle

  • femur

  • body of femur

  • granulocyte
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4602

17863

Ensembl

ENSG00000118513

ENSMUSG00000019982

UniProt

P10242
Q708E1

P06876

RefSeq (mRNA)
NM_001130172
NM_001130173
NM_001161656
NM_001161657
NM_001161658

NM_001161659
NM_001161660
NM_005375

NM_001198914
NM_010848
NM_033597

RefSeq (protein)
NP_001123644
NP_001123645
NP_001155128
NP_001155129
NP_001155130

NP_001155131
NP_001155132
NP_005366

NP_001185843
NP_034978

Location (UCSC)Chr 6: 135.18 – 135.22 MbChr 10: 21 – 21.04 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Mybgenes are part of a largegene family oftranscription factors found in animals and plants. In humans, it includesMyb proto-oncogene like 1 andMyb-related protein B in addition toMYB proper.[5][6] Members of the extendedSANT/Myb family also include theSANT domain and other similar all-helicalhomeobox-like domains.

Function

[edit]

Viral

[edit]

The Myb gene family is named after the eponymous gene inAvian myeloblastosis virus. The viral Myb (v-Myb,P01104) recognizes the sequence 5'-YAACKG-3'. It causes myeloblastosis (myeloid leukemia) in chickens.[7] Compared to the normal animal cellular Myb (c-myb), v-myb contains deletions in the C-terminal regulatory domain, leading to aberrant activation of other oncogenes.[8]

Animals

[edit]

Myb proto-oncogene protein is a member of the MYB (myeloblastosis) family oftranscription factors. The protein contains three domains, anN-terminalDNA-binding domain, a central transcriptional activation domain and a C-terminal domain involved in transcriptionalrepression. It may play a role in cell cycle regulation. Like the viral version, this gene is anoncogene, and rearrangements of the gene (often involving deletion in the C-terminal domain) causes cancer.[8]

Plants

[edit]

MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain. Plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain.[9]

In maize,phlobaphenes are synthesized in the flavonoids synthetic pathway[10] from polymerisation offlavan-4-ols[11][12] which encodes an R2R3 myb-liketranscriptional activator[13] of the A1 gene encoding for thedihydroflavonol 4-reductase (reducingdihydroflavonols into flavan-4-ols)[14] while another gene (Suppressor of Pericarp Pigmentation 1 or SPP1) acts as asuppressor.[15] The maize P gene encodes a Myb homolog that recognizes the sequence CCWACC, in sharp contrast with the YAACGG bound by vertebrate Myb proteins.[16]

In sorghum, the corresponding yellow seed 1 gene (y1)[17] also encodes a R2R3 type of Myb domain protein that regulates the expression ofchalcone synthase,chalcone isomerase anddihydroflavonol reductase genes required for the biosynthesis of3-deoxyflavonoids.[18]

Ruby is a MYB transcriptional activator of genes that produceanthocyanin in citrus fruits. In most citrus varieties Ruby is non-functional, but in blood oranges it upregulates anthocyanin production to produce the characteristic red color of the fruit.[19]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000118513Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000019982Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Chen Y, Xu H, Liu J, Zhang C, Leutz A, Mo X (Jul 2007). "The c-Myb functions as a downstream target of PDGF-mediated survival signal in vascular smooth muscle cells".Biochem Biophys Res Commun.360 (2):433–6.Bibcode:2007BBRC..360..433C.doi:10.1016/j.bbrc.2007.06.078.PMID 17599807.
  6. ^"Entrez Gene: v-myb myeloblastosis viral oncogene homolog (avian)".
  7. ^Klempnauer KH, Symonds G, Evan GI, Bishop JM (June 1984). "Subcellular localization of proteins encoded by oncogenes of avian myeloblastosis virus and avian leukemia virus E26 and by chicken c-myb gene".Cell.37 (2):537–47.doi:10.1016/0092-8674(84)90384-2.PMID 6327074.S2CID 46196167.
  8. ^abGeorge OL, Ness SA (October 2014)."Situational awareness: regulation of the myb transcription factor in differentiation, the cell cycle and oncogenesis".Cancers.6 (4):2049–71.doi:10.3390/cancers6042049.PMC 4276956.PMID 25279451.
  9. ^Stracke R, Werber M, Weisshaar B (October 2001). "The R2R3-MYB gene family in Arabidopsis thaliana".Curr. Opin. Plant Biol.4 (5):447–56.Bibcode:2001COPB....4..447S.doi:10.1016/s1369-5266(00)00199-0.PMID 11597504.
  10. ^Himi E, Mares DJ, Yanagisawa A, Noda K (July 2002)."Effect of grain colour gene (R) on grain dormancy and sensitivity of the embryo to abscisic acid (ABA) in wheat".J. Exp. Bot.53 (374):1569–74.doi:10.1093/jxb/erf005.PMID 12096095.
  11. ^Winkel-Shirley B (June 2001)."Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology".Plant Physiol.126 (2):485–93.doi:10.1104/pp.126.2.485.PMC 1540115.PMID 11402179.
  12. ^Chopra S, Cocciolone SM, Bushman S, Sangar V, McMullen MD, Peterson T (March 2003)."The maize unstable factor for orange1 is a dominant epigenetic modifier of a tissue specifically silent allele of pericarp color1".Genetics.163 (3):1135–46.doi:10.1093/genetics/163.3.1135.PMC 1462483.PMID 12663550.
  13. ^Structural And Transcriptional Analysis Of The Complex P1-wr Cluster In Maize. Wolfgang Goettel, Joachim Messing. Plant & Animal Genomes XVI ConferenceArchived 2012-02-18 at theWayback Machine
  14. ^Dong X, Braun EL, Grotewold E (September 2001)."Functional conservation of plant secondary metabolic enzymes revealed by complementation of Arabidopsis flavonoid mutants with maize genes"(PDF).Plant Physiol.127 (1):46–57.doi:10.1104/pp.127.1.46.hdl:1811/48809.PMC 117961.PMID 11553733.
  15. ^Lee EA, Harper V (2002). "Suppressor of Pericarp Pigmentation 1 (SPP1), a novel gene involved in phlobaphene accumulation in maize (Zea mays L.) pericarps".Maydica.47 (1):51–58.INIST 13772300
  16. ^Grotewold E, Drummond BJ, Bowen B, Peterson T (1994). "The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset".Cell.76 (3):543–554.doi:10.1016/0092-8674(94)90117-1.PMID 8313474.S2CID 42197232.
  17. ^Boddu J, Svabek C, Ibraheem F, Jones AD, Chopra S (2005). "Characterization of a deletion allele of a sorghum Myb gene yellow seedl showing loss of 3-deoxyflavonoids".Plant Science.169 (3):542–552.Bibcode:2005PlnSc.169..542B.doi:10.1016/j.plantsci.2005.05.007.INIST 16983977
  18. ^Boddu J, Jiang C, Sangar V, Olson T, Peterson T, Chopra S (January 2006). "Comparative structural and functional characterization of sorghum and maize duplications containing orthologous myb transcription regulators of 3-deoxyflavonoid biosynthesis".Plant Mol. Biol.60 (2):185–99.Bibcode:2006PMolB..60..185B.doi:10.1007/s11103-005-3568-1.PMID 16429259.S2CID 23841582.
  19. ^Butelli E, Licciardello C, Zhang Y, Liu J, Mackay S, Bailey P, Reforgiato-Recupero G, Martin C (2012)."Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges".Plant Cell.24 (3):1242–55.Bibcode:2012PlanC..24.1242B.doi:10.1105/tpc.111.095232.PMC 3336134.PMID 22427337.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

PDB gallery
  • 1guu: CRYSTAL STRUCTURE OF C-MYB R1
    1guu: CRYSTAL STRUCTURE OF C-MYB R1
  • 1gv2: CRYSTAL STRUCTURE OF C-MYB R2R3
    1gv2: CRYSTAL STRUCTURE OF C-MYB R2R3
  • 1gv5: CRYSTAL STRUCTURE OF C-MYB R2
    1gv5: CRYSTAL STRUCTURE OF C-MYB R2
  • 1gvd: CRYSTAL STRUCTURE OF C-MYB R2 V103L MUTANT
    1gvd: CRYSTAL STRUCTURE OF C-MYB R2 V103L MUTANT
  • 1h88: CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
    1h88: CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
  • 1h89: CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
    1h89: CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
  • 1h8a: CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3
    1h8a: CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3
  • 1idy: STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE
    1idy: STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE
  • 1idz: STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, 20 STRUCTURES
    1idz: STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, 20 STRUCTURES
  • 1mbe: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
    1mbe: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
  • 1mbf: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
    1mbf: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
  • 1mbg: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
    1mbg: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
  • 1mbh: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
    1mbh: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
  • 1mbj: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
    1mbj: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
  • 1mbk: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
    1mbk: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
  • 1mse: SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
    1mse: SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
  • 1msf: SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
    1msf: SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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