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MMP28

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
MMP28
Identifiers
AliasesMMP28, EPILYSIN, MM28, MMP-25, MMP-28, MMP25, matrix metallopeptidase 28
External IDsOMIM:608417;MGI:2153062;HomoloGene:41559;GeneCards:MMP28;OMA:MMP28 - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for MMP28
Genomic location for MMP28
Band17q12Start35,756,249bp[1]
End35,795,707bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for MMP28
Genomic location for MMP28
Band11|11 CStart83,331,594bp[2]
End83,353,897bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • tibial nerve

  • right testis

  • left testis

  • skin of abdomen

  • transverse colon

  • right lung

  • upper lobe of left lung

  • rectum

  • mucosa of transverse colon

  • skin of leg
Top expressed in
  • Paneth cell

  • esophagus

  • lip

  • embryo

  • stomach

  • muscle of thigh

  • brown adipose tissue

  • transitional epithelium of urinary bladder

  • ascending aorta

  • aortic valve
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

79148

118453

Ensembl

ENSG00000278843
ENSG00000271447

ENSMUSG00000020682

UniProt

Q9H239

n/a

RefSeq (mRNA)

NM_001032278
NM_024302
NM_032950

NM_080453
NM_172797
NM_001320300

RefSeq (protein)

NP_001027449
NP_077278
NP_116568
NP_116568.1

n/a

Location (UCSC)Chr 17: 35.76 – 35.8 MbChr 11: 83.33 – 83.35 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Matrix metalloproteinase 28 also known asepilysin is anenzyme that in humans is encoded by theMMP28gene.[5][6][7]

Function

[edit]

Matrix metalloproteinase 28, also known as epilysin, belongs to a family of proteins known as matrix metalloproteinases which are common to tissue regulation. Matrix metalloproteinases are commonly known to degrade the extracellular matrix, alongside regulating cell surface receptors MMP-28 releases growth factors and adhesion molecules to modulate inflammation.[8] MMP-28 is unique in that it can be found in many regular tissues, denoting a potential role in maintaining the healthy structure and function of most tissue. MMPs commonly modulate their expression via negative and positive feedback loops as a result of releasing and responding to growth hormones.

MMP-28 is less frequently found in tissues such as the brain, colon, heart, and lungs.[9] However, MMP-28 is expressed heavily in organs such as the testes. Epilysin is also found in high concentration in basal keratinocytes in injured skin, even at some distance away from the wound, showing a role in repairing damaged tissue. MMP-28 also can alter the cell membrane to become more adhesive, and not allowing the cell to migrate.[10]

Structure

[edit]

MMP-28 is a 520 amino acid long protein. The estimated signal peptide sequence appears as a long tail of random coil coming off of the protein that helps to guide the protein to excretion with the sequence PRCGVTD.[11] The zinc binding catalytic site is tucked within an alpha helix within the center of the protein with a HEIGHTLGLTH sequence at positions 240–250 with a hemopexin-like domain. Epilysin contains 8 exons, 5 of which are splice sites unique to MMP-28 and not used by any other metalloproteinase in the MMP family.

Epilysin contains 8 exons, 5 of which are splice sites unique to MMP-28 and not used by any other metalloproteinase in the MMP family.

The full amino acid sequence is listed on uniprot.[12]

Clinical implications

[edit]

The overexpression of MMP-28 is linked to the metastasis of tumors in cancer.[13] Expression of MMP-28 can be linked to tumor diameter, depth of invasion, and stage of metastasis. In patients with positive overexpression of MMP-28, survival may be significantly less likely compared to negative expression of this protein, making it a potentially important marker for proactive prognosis of some forms of cancer.

MMP-28 may also play an important role in the breakdown ofmyelin,[14] an important component of nervous system functionality.Demyelination may interrupt nerve signaling or even halt it completely, which can create severe neurological effects such as multiple sclerosistransverse myelitis andneuromyelitis optica.[15]

References

[edit]
  1. ^abcENSG00000271447 GRCh38: Ensembl release 89: ENSG00000278843, ENSG00000271447Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000020682Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Lohi J, Wilson CL, Roby JD, Parks WC (March 2001)."Epilysin, a novel human matrix metalloproteinase (MMP-28) expressed in testis and keratinocytes and in response to injury".The Journal of Biological Chemistry.276 (13):10134–10144.doi:10.1074/jbc.M001599200.PMID 11121398.
  6. ^Marchenko GN, Strongin AY (March 2001). "MMP-28, a new human matrix metalloproteinase with an unusual cysteine-switch sequence is widely expressed in tumors".Gene.265 (1–2):87–93.doi:10.1016/S0378-1119(01)00360-2.PMID 11255011.
  7. ^"Entrez Gene: MMP28 matrix metallopeptidase 28".
  8. ^Illman SA, Lohi J, Keski-Oja J (November 2008)."Epilysin (MMP-28)--structure, expression and potential functions".Experimental Dermatology.17 (11):897–907.doi:10.1111/j.1600-0625.2008.00782.x.PMID 18803661.S2CID 9952480.
  9. ^Lohi J, Wilson CL, Roby JD, Parks WC (March 2001)."Epilysin, a novel human matrix metalloproteinase (MMP-28) expressed in testis and keratinocytes and in response to injury".The Journal of Biological Chemistry.276 (13):10134–10144.doi:10.1074/jbc.M001599200.PMID 11121398.
  10. ^Rodgers UR, Kevorkian L, Surridge AK, Waters JG, Swingler TE, Culley K, et al. (June 2009)."Expression and function of matrix metalloproteinase (MMP)-28".Matrix Biology.28 (5):263–272.doi:10.1016/j.matbio.2009.04.006.PMC 2724077.PMID 19375502.
  11. ^Lohi J, Wilson CL, Roby JD, Parks WC (March 2001)."Epilysin, a novel human matrix metalloproteinase (MMP-28) expressed in testis and keratinocytes and in response to injury".The Journal of Biological Chemistry.276 (13):10134–10144.doi:10.1074/jbc.m001599200.PMID 11121398.
  12. ^"Uniprot".Uniprot. Retrieved2022-05-09.
  13. ^Zhang J, Pan Q, Yan W, Wang Y, He X, Zhao Z (May 2018)."Overexpression of MMP21 and MMP28 is associated with gastric cancer progression and poor prognosis".Oncology Letters.15 (5):7776–7782.doi:10.3892/ol.2018.8328.PMC 5920775.PMID 29731903.
  14. ^Werner SR, Dotzlaf JE, Smith RC (September 2008)."MMP-28 as a regulator of myelination".BMC Neuroscience.9 83.doi:10.1186/1471-2202-9-83.PMC 2551619.PMID 18778487.
  15. ^"Demyelinating disease: What can you do about it?".Mayo Clinic. Retrieved2022-04-24.

Further reading

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External links

[edit]
  • TheMEROPS online database for peptidases and their inhibitors:M10.030
ADAM proteins
Matrix metalloproteinases
Other
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