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KCNC1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
KCNC1
Identifiers
AliasesKCNC1, KV3.1, KV4, NGK2, EPM7, potassium voltage-gated channel subfamily C member 1
External IDsOMIM:176258;MGI:96667;HomoloGene:68134;GeneCards:KCNC1;OMA:KCNC1 - orthologs
Gene location (Human)
Chromosome 11 (human)
Chr.Chromosome 11 (human)[1]
Chromosome 11 (human)
Genomic location for KCNC1
Genomic location for KCNC1
Band11p15.1Start17,734,774bp[1]
End17,856,804bp[1]
Gene location (Mouse)
Chromosome 7 (mouse)
Chr.Chromosome 7 (mouse)[2]
Chromosome 7 (mouse)
Genomic location for KCNC1
Genomic location for KCNC1
Band7 B3|7 30.1 cMStart46,045,921bp[2]
End46,088,128bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right hemisphere of cerebellum

  • primary visual cortex

  • cerebellar vermis

  • right frontal lobe

  • Brodmann area 9

  • prefrontal cortex

  • Brodmann area 23

  • cingulate gyrus

  • anterior cingulate cortex

  • postcentral gyrus
Top expressed in
  • cerebellar cortex

  • lobe of cerebellum

  • cerebellar vermis

  • substantia nigra

  • pontine nuclei

  • lateral geniculate nucleus

  • deep cerebellar nuclei

  • medial geniculate nucleus

  • medial vestibular nucleus

  • dorsal tegmental nucleus
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3746

16502

Ensembl

ENSG00000129159

ENSMUSG00000058975

UniProt

P48547

P15388

RefSeq (mRNA)

NM_001112741
NM_004976

NM_001112739
NM_008421

RefSeq (protein)

NP_001106212
NP_004967

NP_001106210
NP_032447

Location (UCSC)Chr 11: 17.73 – 17.86 MbChr 7: 46.05 – 46.09 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Potassium voltage-gated channel subfamily C member 1 is aprotein that in humans is encoded by theKCNC1gene.[5][6][7]

The Shaker gene family ofDrosophila encodes components ofvoltage-gated potassium channels and comprises four subfamilies. Based on sequence similarity, this gene is similar to one of these subfamilies, namely the Shaw subfamily. The protein encoded by this gene belongs to thedelayed rectifier class of channel proteins and is an integral membrane protein that mediates the voltage-dependent potassium ion permeability of excitable membranes.[7]

Expression pattern

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Kv3.1 and Kv3.2 channels are prominently expressed inneurons that fire at high frequency. Kv3.1 channels are prominently expressed in brain (cerebellum >globus pallidus,subthalamic nucleus,substantia nigra >reticular thalamic nuclei,cortical andhippocampalinterneurons >inferior colliculi,cochlear andvestibular nuclei), and inretinal ganglion cells.[8][9][10]

Physiological role

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Kv3.1/Kv3.2 conductance is necessary and kinetically optimized for high-frequency action potential generation.[9][11] Kv3.1 channels are important for the high-firing frequency of auditory and fast-spiking GABAergic interneurons, retinal ganglion cells; regulation ofaction potential duration inpresynaptic terminals.[8][10]

Pharmacological properties

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Kv3.1 currents inheterologous systems are highly sensitive to externaltetraethylammonium (TEA) or4-aminopyridine (4-AP) (IC50 values are 0.2 mM and 29 μM respectively).[9][10] This can be useful in identifying native channels.[9] The overlapping sensitivity of potassium current to both 0.5 mM TEA and 30 μM 4-AP strongly suggest an action on Kv3.1 subunits.[12]

Transcript variants

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There are twotranscript variants of Kv3.1 gene: Kv3.1a and Kv3.1b. Kv3.1 isoforms differ only in theirC-terminal sequence.[13]

Clinical significance

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Amissense mutation c.959G>A (p.Arg320His) inKCNC1 causesprogressive myoclonus epilepsy.[14]

See also

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References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000129159Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000058975Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Ried T, Rudy B, Vega-Saenz de Miera E, Lau D, Ward DC, Sen K (Apr 1993)."Localization of a highly conserved human potassium channel gene (NGK2-KV4; KCNC1) to chromosome 11p15".Genomics.15 (2):405–11.doi:10.1006/geno.1993.1075.PMID 8449507.
  6. ^Gutman GA, Chandy KG, Grissmer S, Lazdunski M, McKinnon D, Pardo LA, Robertson GA, Rudy B, Sanguinetti MC, Stuhmer W, Wang X (Dec 2005). "International Union of Pharmacology. LIII. Nomenclature and molecular relationships of voltage-gated potassium channels".Pharmacol Rev.57 (4):473–508.doi:10.1124/pr.57.4.10.PMID 16382104.S2CID 219195192.
  7. ^ab"Entrez Gene: KCNC1 potassium voltage-gated channel, Shaw-related subfamily, member 1".
  8. ^abKolodin YO (2008-04-27)."Ionic conductances underlying excitability in tonically firing retinal ganglion cells of adult rat". Retrieved2008-10-20.
  9. ^abcdRudy B, McBain CJ (September 2001). "Kv3 channels: voltage-gated K+ channels designed for high-frequency repetitive firing".Trends in Neurosciences.24 (9):517–26.doi:10.1016/S0166-2236(00)01892-0.PMID 11506885.S2CID 36100588.
  10. ^abcGutman GA, Chandy KG, Grissmer S, Lazdunski M, McKinnon D, Pardo LA, Robertson GA, Rudy B, Sanguinetti MC, Stühmer W, Wang X (December 2005). "International Union of Pharmacology. LIII. Nomenclature and molecular relationships of voltage-gated potassium channels".Pharmacological Reviews.57 (4):473–508.doi:10.1124/pr.57.4.10.PMID 16382104.S2CID 219195192.
  11. ^Lien CC, Jonas P (March 2003)."Kv3 potassium conductance is necessary and kinetically optimized for high-frequency action potential generation in hippocampal interneurons".Journal of Neuroscience.23 (6):2058–68.doi:10.1523/JNEUROSCI.23-06-02058.2003.PMC 6742035.PMID 12657664.
  12. ^Dallas ML, Atkinson L, Milligan CJ, Morris NP, Lewis DI, Deuchars SA, Deuchars J (February 2005)."Localization and function of the Kv3.1b subunit in the rat medulla oblongata: focus on the nucleus tractus solitarii".The Journal of Physiology.562 (Pt 3):655–72.doi:10.1113/jphysiol.2004.073338.PMC 1665536.PMID 15528247.
  13. ^Rudy B, Chow A, Lau D, Amarillo Y, Ozaita A, Saganich M, Moreno H, Nadal MS, Hernandez-Pineda R, Hernandez-Cruz A, Erisir A, Leonard C, Vega-Saenz de Miera E (April 1999)."Contributions of Kv3 channels to neuronal excitability".Annals of the New York Academy of Sciences.868 (1):304–43.Bibcode:1999NYASA.868..304R.doi:10.1111/j.1749-6632.1999.tb11295.x.PMID 10414303.S2CID 25289187.
  14. ^Muona M, Berkovic SF, Dibbens LM, Oliver KL, Maljevic S, Bayly MA, Joensuu T, Canafoglia L, Franceschetti S, Michelucci R, Markkinen S, Heron SE, Hildebrand MS, Andermann E, Andermann F, Gambardella A, Tinuper P, Licchetta L, Scheffer IE, Criscuolo C, Filla A, Ferlazzo E, Ahmad J, Ahmad A, Baykan B, Said E, Topcu M, Riguzzi P, King MD, Ozkara C, Andrade DM, Engelsen BA, Crespel A, Lindenau M, Lohmann E, Saletti V, Massano J, Privitera M, Espay AJ, Kauffmann B, Duchowny M, Møller RS, Straussberg R, Afawi Z, Ben-Zeev B, Samocha KE, Daly MJ, Petrou S, Lerche H, Palotie A, Lehesjoki AE (2015)."A recurrentde novo mutation inKCNC1 causes progressive myoclonus epilepsy".Nature Genetics.47 (1):39–46.doi:10.1038/ng.3144.PMC 4281260.PMID 25401298.

Further reading

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External links

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This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

Ligand-gated
Voltage-gated
Constitutively active
Proton-gated
Voltage-gated
Calcium-activated
Inward-rectifier
Tandem pore domain
Voltage-gated
Miscellaneous
Cl:Chloride channel
H+:Proton channel
M+:CNG cation channel
M+:TRP cation channel
H2O (+solutes):Porin
Cytoplasm:Gap junction
By gating mechanism
Ion channel class
see alsodisorders
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