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IRF8

From Wikipedia, the free encyclopedia

Protein-coding gene in the species Homo sapiens
IRF8
Identifiers
AliasesIRF8, H-ICSBP, ICSBP, ICSBP1, IMD32A, IMD32B, IRF-8, interferon regulatory factor 8
External IDsOMIM:601565;MGI:96395;HomoloGene:1629;GeneCards:IRF8;OMA:IRF8 - orthologs
Gene location (Human)
Chromosome 16 (human)
Chr.Chromosome 16 (human)[1]
Chromosome 16 (human)
Genomic location for IRF8
Genomic location for IRF8
Band16q24.1Start85,899,116bp[1]
End85,922,606bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for IRF8
Genomic location for IRF8
Band8 E1|8 70.05 cMStart121,463,097bp[2]
End121,483,433bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • monocyte

  • lymph node

  • spleen

  • secondary oocyte

  • appendix

  • granulocyte

  • blood

  • epithelium of colon

  • bone marrow

  • rectum
Top expressed in
  • Ileal epithelium

  • mesenteric lymph nodes

  • spleen

  • bone marrow

  • tibiofemoral joint

  • submandibular gland

  • crypt of lieberkuhn of small intestine

  • jejunum

  • stroma of bone marrow

  • subcutaneous adipose tissue
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3394

15900

Ensembl

ENSG00000140968

ENSMUSG00000041515

UniProt

Q02556

P23611

RefSeq (mRNA)

NM_002163
NM_001363907
NM_001363908

NM_001301811
NM_008320

RefSeq (protein)

NP_002154
NP_001350836
NP_001350837

NP_001288740
NP_032346

Location (UCSC)Chr 16: 85.9 – 85.92 MbChr 8: 121.46 – 121.48 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Interferon regulatory factor 8 (IRF8) also known asinterferon consensus sequence-binding protein (ICSBP), is aprotein that in humans is encoded by theIRF8gene.[5][6][7] IRF8 is atranscription factor that plays critical roles in the regulation of lineage commitment and inmyeloidcell maturation including the decision for a common myeloid progenitor (CMP) todifferentiate into amonocyte precursor cell.

Function

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Interferon Consensus Sequence-binding protein (ICSBP) is atranscription factor of theinterferon regulatory factor (IRF) family. Proteins of this family are composed of a conservedDNA-binding domain in theN-terminal region and a divergentC-terminal region that serves as the regulatory domain. The IRF family proteins bind to the IFN-stimulatedresponse element (ISRE) and regulate expression of genes stimulated by type I IFNs, namelyIFN-α andIFN-β. IRF family proteins also control expression of IFN-α and IFN-β-regulated genes that are induced by viral infection.[5]

Knockout studies

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IFN-producing cells (mIPCs) were absent in all lymphoid organs from ICSBPknockout (KO) mice, as revealed by lack of CD11clowB220+Ly6C+CD11b cells. In parallel, CD11c+ cells isolated from ICSBP KO spleens were unable to produce type I IFNs in response to viral stimulation. ICSBP KO mice also displayed a marked reduction of the DC subset expressing the CD8alpha marker (CD8alpha+ DCs) in spleen, lymph nodes, and thymus. Moreover, ICSBP-deficient CD8alpha+ DCs exhibited a markedly impaired phenotype when compared with WT DCs. They expressed very low levels of costimulatory molecules (intercellular adhesion moleculeICAM1,CD40,CD80,CD86) and of the T cell area-homing chemokine receptorCCR7.[8]

Clinical significance

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In myeloid cells, IRF8 regulates the expression ofBax andFas to regulateapoptosis.[9] Inchronic myelogenous leukemia (CML), IRF8 regulates acidceramidase to mediate CML apoptosis.[10]

IRF8 is highly expressed in myeloid cells and was originally identified in as a critical lineage-specific transcription factor for myeloid cell differentiation,[11] recent studies, however, have shown that IRF8 is also constitutively expressed in non-hematopoietic cancer cells, albeit at a lower level. Furthermore, IRF8 can also be up-regulated by IFN-γ in non-hemotopoietic cells. IRF8 mediates the expression of Fas, Bax,FLIP,Jak1 andSTAT1 to mediate apoptosis in non-hemotopoietic cancer cells.[12][13][14]

Analysis of human cancer genomics database revealed that IRF8 is not significantly focally amplified across the entire dataset of 3131 tumors, but is significantly focally deleted across the entire dataset of 3131 tumors, suggesting that IRF8 is potentially atumor suppressor in humans.[15] Molecular analysis indicated that the IRF8 gene promoter is hypermethylated in humancolon carcinoma cells,[14][16] suggesting that these cells might use DNA methylation to silence IRF8 expression to advance the disease.

Interactions

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IRF8 has been shown tointeract withIRF1[17][18] andCOPS2.[19]

See also

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References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000140968Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000041515Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: IRF8 interferon regulatory factor 8".
  6. ^Weisz A, Marx P, Sharf R, Appella E, Driggers PH, Ozato K, Levi BZ (December 1992)."Human interferon consensus sequence binding protein is a negative regulator of enhancer elements common to interferon-inducible genes".J. Biol. Chem.267 (35):25589–96.doi:10.1016/S0021-9258(19)74081-2.PMID 1460054.[permanent dead link]
  7. ^Nehyba J, Hrdlicková R, Burnside J, Bose HR (June 2002)."A novel interferon regulatory factor (IRF), IRF-10, has a unique role in immune defense and is induced by the v-Rel oncoprotein".Mol. Cell. Biol.22 (11):3942–57.doi:10.1128/MCB.22.11.3942-3957.2002.PMC 133824.PMID 11997525.
  8. ^Tamura T, Ozato K (January 2002)."ICSBP/IRF-8: its regulatory roles in the development of myeloid cells".J. Interferon Cytokine Res.22 (1):145–52.doi:10.1089/107999002753452755.PMID 11846985.
  9. ^Yang J, Hu X, Zimmerman M, Torres CM, Yang D, Smith SB, Liu K (November 2011)."Cutting edge: IRF8 regulates Bax transcription in vivo in primary myeloid cells".J. Immunol.187 (9):4426–30.doi:10.4049/jimmunol.1101034.PMC 3197864.PMID 21949018.
  10. ^Hu X, Yang D, Zimmerman M, Liu F, Yang J, Kannan S, Burchert A, Szulc Z, Bielawska A, Ozato K, Bhalla K, Liu K (April 2011)."IRF8 regulates acid ceramidase expression to mediate apoptosis and suppresses myelogeneous leukemia".Cancer Res.71 (8):2882–91.doi:10.1158/0008-5472.CAN-10-2493.PMC 3078194.PMID 21487040.
  11. ^Holtschke T, Löhler J, Kanno Y, Fehr T, Giese N, Rosenbauer F, Lou J, Knobeloch KP, Gabriele L, Waring JF, Bachmann MF, Zinkernagel RM, Morse HC, Ozato K, Horak I (October 1996)."Immunodeficiency and chronic myelogenous leukemia-like syndrome in mice with a targeted mutation of the ICSBP gene".Cell.87 (2):307–17.doi:10.1016/S0092-8674(00)81348-3.PMID 8861914.S2CID 18065448.
  12. ^Yang D, Wang S, Brooks C, Dong Z, Schoenlein PV, Kumar V, Ouyang X, Xiong H, Lahat G, Hayes-Jordan A, Lazar A, Pollock R, Lev D, Liu K (February 2009)."IFN regulatory factor 8 sensitizes soft tissue sarcoma cells to death receptor-initiated apoptosis via repression of FLICE-like protein expression".Cancer Res.69 (3):1080–8.doi:10.1158/0008-5472.CAN-08-2520.PMC 2633427.PMID 19155307.
  13. ^Yang D, Thangaraju M, Browning DD, Dong Z, Korchin B, Lev DC, Ganapathy V, Liu K (October 2007)."IFN regulatory factor 8 mediates apoptosis in nonhemopoietic tumor cells via regulation of Fas expression".J. Immunol.179 (7):4775–82.doi:10.4049/jimmunol.179.7.4775.PMID 17878376.
  14. ^abYang D, Thangaraju M, Greeneltch K, Browning DD, Schoenlein PV, Tamura T, Ozato K, Ganapathy V, Abrams SI, Liu K (April 2007). "Repression of IFN regulatory factor 8 by DNA methylation is a molecular determinant of apoptotic resistance and metastatic phenotype in metastatic tumor cells".Cancer Res.67 (7):3301–9.doi:10.1158/0008-5472.CAN-06-4068.PMID 17409439.
  15. ^"Tumorscape". The Broad Institute. Archived fromthe original on 2012-04-14. Retrieved2012-07-05.
  16. ^McGough JM, Yang D, Huang S, Georgi D, Hewitt SM, Röcken C, Tänzer M, Ebert MP, Liu K (December 2008)."DNA methylation represses IFN-gamma-induced and signal transducer and activator of transcription 1-mediated IFN regulatory factor 8 activation in colon carcinoma cells".Mol. Cancer Res.6 (12):1841–51.doi:10.1158/1541-7786.MCR-08-0280.PMC 2605678.PMID 19074829.
  17. ^Schaper F, Kirchhoff S, Posern G, Köster M, Oumard A, Sharf R, Levi BZ, Hauser H (October 1998)."Functional domains of interferon regulatory factor I (IRF-1)".Biochem. J.335 (1):147–57.doi:10.1042/bj3350147.PMC 1219763.PMID 9742224.
  18. ^Sharf R, Azriel A, Lejbkowicz F, Winograd SS, Ehrlich R, Levi BZ (June 1995)."Functional domain analysis of interferon consensus sequence binding protein (ICSBP) and its association with interferon regulatory factors".J. Biol. Chem.270 (22):13063–9.doi:10.1074/jbc.270.22.13063.PMID 7768900.
  19. ^Cohen H, Azriel A, Cohen T, Meraro D, Hashmueli S, Bech-Otschir D, Kraft R, Dubiel W, Levi BZ (December 2000)."Interaction between interferon consensus sequence-binding protein and COP9/signalosome subunit CSN2 (Trip15). A possible link between interferon regulatory factor signaling and the COP9/signalosome".J. Biol. Chem.275 (50):39081–9.doi:10.1074/jbc.M004900200.PMID 10991940.

Illustrations

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Further reading

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External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
Ligand
Cytokine receptor
Janus kinase
Adaptor proteins
STAT
PIAS
SOCS
IRF
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