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HOXA4

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

HOXA4
Identifiers
AliasesHOXA4, HOX1, HOX1D, homeobox A4
External IDsOMIM:142953;MGI:96176;HomoloGene:37583;GeneCards:HOXA4;OMA:HOXA4 - orthologs
Gene location (Human)
Chromosome 7 (human)
Chr.Chromosome 7 (human)[1]
Chromosome 7 (human)
Genomic location for HOXA4
Genomic location for HOXA4
Band7p15.2Start27,128,507bp[1]
End27,130,780bp[1]
Gene location (Mouse)
Chromosome 6 (mouse)
Chr.Chromosome 6 (mouse)[2]
Chromosome 6 (mouse)
Genomic location for HOXA4
Genomic location for HOXA4
Band6 B3|6 25.4 cMStart52,166,651bp[2]
End52,168,733bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • gastric mucosa

  • C1 segment

  • muscle of thigh

  • fallopian tube

  • Descending thoracic aorta

  • left uterine tube

  • right uterine tube

  • gastrocnemius muscle

  • right lung

  • mucosa of esophagus
Top expressed in
  • seminiferous tubule

  • hair bulb

  • spermatocyte

  • CA3 field

  • spermatid

  • inner root sheath

  • tail of embryo

  • brown adipose tissue

  • thyroid gland

  • outer root sheath of hair follicle
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3201

15401

Ensembl

ENSG00000197576

ENSMUSG00000000942

UniProt

Q00056

P06798

RefSeq (mRNA)

NM_002141

NM_008265

RefSeq (protein)

NP_002132

NP_032291

Location (UCSC)Chr 7: 27.13 – 27.13 MbChr 6: 52.17 – 52.17 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Homeobox A4, also known asHOXA4, is aprotein which in humans is encoded by theHOXA4gene.[5][6]

Function

[edit]

In vertebrates, the genes encoding the class oftranscription factors calledhomeobox genes are found in clusters named A, B, C, and D on four separate chromosomes.[7] Expression of these proteins is spatially and temporally regulated duringembryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulategene expression,morphogenesis, anddifferentiation.[5]

See also

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References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000197576Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000000942Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: HOXA4 homeobox A4".
  6. ^McAlpine PJ, Shows TB (July 1990). "Nomenclature for human homeobox genes".Genomics.7 (3): 460.doi:10.1016/0888-7543(90)90186-X.PMID 1973146.
  7. ^Scott MP (November 1992). "Vertebrate homeobox gene nomenclature".Cell.71 (4):551–553.doi:10.1016/0092-8674(92)90588-4.PMID 1358459.S2CID 13370372.

Further reading

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External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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