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Factor XI

From Wikipedia, the free encyclopedia
Mammalian protein found in Homo sapiens

F11
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1XX9,1XXD,1XXF,1ZHM,1ZHP,1ZHR,1ZJD,1ZLR,1ZMJ,1ZML,1ZMN,1ZOM,1ZPB,1ZPC,1ZPZ,1ZRK,1ZSJ,1ZSK,1ZSL,1ZTJ,1ZTK,1ZTL,2F83,2FDA,2J8J,2J8L,3BG8,3SOR,3SOS,4CR5,4CR9,4CRA,4CRB,4CRC,4CRD,4CRE,4CRF,4CRG,4NA7,4NA8,4TY6,4TY7,4WXI,4X6M,4X6N,4X6O,4X6P,4Y8X,4Y8Y,4Y8Z,4D7F,5E2O,5E2P,4D76,4D7G,5EXL,5I25,5EXM,5EOD,5EXN,5EOK

Identifiers
AliasesF11, FXI, coagulation factor XI, PTA, factor XI
External IDsOMIM:264900;MGI:99481;HomoloGene:86654;GeneCards:F11;OMA:F11 - orthologs
Gene location (Human)
Chromosome 4 (human)
Chr.Chromosome 4 (human)[1]
Chromosome 4 (human)
Genomic location for F11
Genomic location for F11
Band4q35.2Start186,266,189bp[1]
End186,289,681bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for F11
Genomic location for F11
Band8 B1.1|8 25.14 cMStart45,694,211bp[2]
End45,715,068bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lobe of liver

  • body of pancreas

  • jejunal mucosa

  • renal medulla

  • testicle

  • pancreatic epithelial cell

  • duodenum

  • pancreatic ductal cell

  • human kidney

  • gallbladder
Top expressed in
  • left lobe of liver

  • right lobe of liver

  • fetal liver hematopoietic progenitor cell

  • sexually immature organism

  • seminiferous tubule

  • neural layer of retina

  • human fetus

  • atrioventricular valve

  • spermatid

  • ureter
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2160

109821

Ensembl

ENSG00000088926

ENSMUSG00000031645

UniProt

P03951

Q91Y47

RefSeq (mRNA)

NM_000128
NM_019559
NM_001354804

NM_028066

RefSeq (protein)

NP_000119
NP_001341733

NP_082342

Location (UCSC)Chr 4: 186.27 – 186.29 MbChr 8: 45.69 – 45.72 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Factor XI, orplasma thromboplastin antecedent, is thezymogen form of factor XIa, one of theenzymes involved incoagulation. Like many other coagulation factors, it is aserine protease. In humans, factor XI is encoded byF11gene.[5][6][7][8]

Function

[edit]

Factor XI (FXI) is produced by theliver and circulates as ahomo-dimer in its inactive form.[9] The plasma half-life of FXI is approximately 52 hours. The zymogen factor is activated intofactor XIa byfactor XIIa (FXIIa),thrombin, and FXIa itself; due to its activation by FXIIa, FXI is a member of the "contact pathway" (which includesHMWK,prekallikrein,factor XII, factor XI, andfactor IX).[10]

Factor XIa activates factor IX by selectively cleavingarg-ala andarg-valpeptide bonds. Factor IXa, in turn, forms a complex with Factor VIIIa (FIXa-FVIIIa) and activatesfactor X.

Physiological inhibitors of factor XIa includeprotein Z-dependent protease inhibitor (ZPI, a member of theserine protease inhibitor/serpin class of proteins), which is independent ofprotein Z (its action on factor X, however, is protein Z-dependent, hence its name).

Structure

[edit]

Although synthesized as a single polypeptide chain, FXI circulates as a homodimer. Every chain has a relative molecular mass of approximately 80000. Typical plasma concentrations of FXI are 5 μg/mL, corresponding to a plasma concentration (of FXI dimers) of approximately 30 nM.The FXI gene is 23kb in length, has 15 exons, and is found on chromosome 4q32-35.[6][7]

Factor XI consists of fourapple domains, that create a disk-like platform around the base of a fifth, catalyticserine protease domain.One contains a binding site forthrombin, another forhigh molecular weight kininogen, a third one forfactor IX,heparin andglycoprotein Ib and the fourth is implicated in forming the factor XI homodimer, including acysteine residue that creates adisulfide bond.

In the homodimer, the apple domains create two disk-like platforms connected together at an angle, with the catalytic domains sticking out at each side of the dimer.

Activation by thrombin orfactor XIIa is achieved by cleavage of Arg369-Ile370 peptide bonds on both subunits of the dimer. This results in a partial detachment of the catalytic domain from the disk-like apple domains, still linked to the fourth domain with a disulfide bond, but now farther from the third domain.This is thought that this exposes the factor IX binding site of the third apple domain, allowing factor XI's protease activity on it.[11]

Role in disease

[edit]

Deficiency of factor XI causes the rarehemophilia C; this mainly occurs inAshkenaziJews and is believed to affect approximately 8% of that population. Less commonly, hemophilia C can be found in Jews of Iraqi ancestry and in Israeli Arabs. The condition has been described in other populations at around 1% of cases. There is little spontaneous bleeding, but surgical procedures may cause excessive blood loss, and prophylaxis is required.[12]

Low levels of factor XI also occur in many other disease states, includingNoonan syndrome.

High levels of factor XI have been implicated inthrombosis, although it is uncertain what determines these levels and how serious the procoagulant state is.

Inhibition

[edit]

Pharmacological inhibitors of factor XI that are under clinical development but not yet approved for treatment as of May 2022[update] include the oral factor XIa inhibitorsAsundexian (BAY 2433334)[13] andMilvexian[14] as well as the monoclonal anti-factor XI antibodyabelacimab (MAA868). The idea behind producing such an inhibitor is that XI is mostly involved in intrinsic/contact activation pathway,[15] which plays a bigger role inthrombosis as opposed tohemostasis, so targeting it may reduce clotting risks without a corresponding increase in bleeding.[16] Anabelacimab trial appears to have indeed produced this result.[17]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000088926Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000031645Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Fujikawa K, Chung DW, Hendrickson LE, Davie EW (May 1986). "Amino acid sequence of human factor XI, a blood coagulation factor with four tandem repeats that are highly homologous with plasma prekallikrein".Biochemistry.25 (9):2417–2424.doi:10.1021/bi00357a018.PMID 3636155.
  6. ^abAsakai R, Davie EW, Chung DW (Nov 1987). "Organization of the gene for human factor XI".Biochemistry.26 (23):7221–7228.doi:10.1021/bi00397a004.PMID 2827746.
  7. ^abKato A, Asakai R, Davie EW, Aoki N (1989). "Factor XI gene (F11) is located on the distal end of the long arm of human chromosome 4".Cytogenetics and Cell Genetics.52 (1–2):77–78.doi:10.1159/000132844.PMID 2612218.
  8. ^Buetow KH, Shiang R, Yang P, Nakamura Y, Lathrop GM, White R, et al. (May 1991)."A detailed multipoint map of human chromosome 4 provides evidence for linkage heterogeneity and position-specific recombination rates".American Journal of Human Genetics.48 (5):911–925.PMC 1683054.PMID 1673289.
  9. ^Wu W, Sinha D, Shikov S, Yip CK, Walz T, Billings PC, et al. (Jul 2008)."Factor XI homodimer structure is essential for normal proteolytic activation by factor XIIa, thrombin, and factor XIa".The Journal of Biological Chemistry.283 (27):18655–18664.doi:10.1074/jbc.M802275200.PMC 2441546.PMID 18441012.
  10. ^Walsh PN (Jul 2001)."Roles of platelets and factor XI in the initiation of blood coagulation by thrombin".Thrombosis and Haemostasis.86 (1):75–82.doi:10.1055/s-0037-1616203.PMID 11487044.S2CID 32572142. Archived fromthe original on 2016-04-16. Retrieved2009-01-07.
  11. ^Emsley J, McEwan PA, Gailani D (Apr 2010)."Structure and function of factor XI".Blood.115 (13):2569–2577.doi:10.1182/blood-2009-09-199182.PMC 4828079.PMID 20110423.
  12. ^Bolton-Maggs PH (Jun 1996). "Factor XI deficiency".Bailliere's Clinical Haematology.9 (2):355–368.doi:10.1016/S0950-3536(96)80068-0.PMID 8800510.
  13. ^Clinical trial numberNCT04304508 for "Study to Gather Information About Proper Dosing and Safety of the Oral FXIa Inhibitor BAY 2433334 in Patients Following a Recent Non Cardioembolic Ischemic Stroke Which Occurs When a Blood Clot Has Formed Somewhere in the Human Body (But Not in the Heart) Travelled to the Brain. (PACIFIC-STROKE)" atClinicalTrials.gov
  14. ^Weitz JI, Strony J, Ageno W, Gailani D, Hylek EM, Lassen MR, et al. (November 2021)."Milvexian for the Prevention of Venous Thromboembolism".The New England Journal of Medicine.385 (23):2161–2172.doi:10.1056/NEJMoa2113194.PMC 9540352.PMID 34780683.S2CID 244132392.
  15. ^Long AT, Kenne E, Jung R, Fuchs TA, Renné T (March 2016)."Contact system revisited: an interface between inflammation, coagulation, and innate immunity".Journal of Thrombosis and Haemostasis.14 (3):427–437.doi:10.1111/jth.13235.PMID 26707513.
  16. ^Verhamme P, Yi BA, Segers A, Salter J, Bloomfield D, Buller HR, et al. (12 August 2021)."Abelacimab for Prevention of Venous Thromboembolism".The New England Journal of Medicine.385 (7):609–617.doi:10.1056/NEJMoa2105872.PMID 34297496.S2CID 236198598.
  17. ^Ruff CT, Patel SM, Giugliano RP, Morrow DA, Hug B, Kuder JF, et al. (23 January 2025). "Abelacimab versus Rivaroxaban in Patients with Atrial Fibrillation".The New England Journal of Medicine.392 (4):361–371.doi:10.1056/NEJMoa2406674.PMID 39842011.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1xx9: Crystal Structure of the FXIa Catalytic Domain in Complex with EcotinM84R
    1xx9: Crystal Structure of the FXIa Catalytic Domain in Complex with EcotinM84R
  • 1xxd: Crystal Structure of the FXIa Catalytic Domain in Complex with mutated Ecotin
    1xxd: Crystal Structure of the FXIa Catalytic Domain in Complex with mutated Ecotin
  • 1xxf: Crystal Structure of the FXIa Catalytic Domain in Complex with Ecotin Mutant (EcotinP)
    1xxf: Crystal Structure of the FXIa Catalytic Domain in Complex with Ecotin Mutant (EcotinP)
  • 1zhm: Crystal Structure of the Catalytic Domain of the Coagulation Factor XIa in Complex with Benzamidine (S434A-T475A-K437 Mutant)
    1zhm: Crystal Structure of the Catalytic Domain of the Coagulation Factor XIa in Complex with Benzamidine (S434A-T475A-K437 Mutant)
  • 1zhp: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with Benzamidine (S434A-T475A-K505 Mutant)
    1zhp: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with Benzamidine (S434A-T475A-K505 Mutant)
  • 1zhr: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with Benzamidine (S434A-T475A-C482S-K437A Mutant)
    1zhr: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with Benzamidine (S434A-T475A-C482S-K437A Mutant)
  • 1zjd: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with Kunitz Protease Inhibitor Domain of Protease Nexin II
    1zjd: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with Kunitz Protease Inhibitor Domain of Protease Nexin II
  • 1zlr: Factor XI catalytic domain complexed with 2-guanidino-1-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)ethyl nicotinate
    1zlr: Factor XI catalytic domain complexed with 2-guanidino-1-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)ethyl nicotinate
  • 1zmj: Crystal Structure of the Catalytic Domain of Factor XI in complex with 4-(guanidinomethyl)-phenylboronic acid
    1zmj: Crystal Structure of the Catalytic Domain of Factor XI in complex with 4-(guanidinomethyl)-phenylboronic acid
  • 1zml: Crystal Structure of the Catalytic Domain of Factor XI in complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenethyl)guanidine
    1zml: Crystal Structure of the Catalytic Domain of Factor XI in complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenethyl)guanidine
  • 1zmn: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenyl)guanidine
    1zmn: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenyl)guanidine
  • 1zom: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in complex with a peptidomimetic Inhibitor
    1zom: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in complex with a peptidomimetic Inhibitor
  • 1zpb: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 4-Methyl-pentanoic acid {1-[4-guanidino-1-(thiazole-2-carbonyl)-butylcarbamoyl]-2-methyl-propyl}-amide
    1zpb: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 4-Methyl-pentanoic acid {1-[4-guanidino-1-(thiazole-2-carbonyl)-butylcarbamoyl]-2-methyl-propyl}-amide
  • 1zpc: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 2-[2-(3-Chloro-phenyl)-2-hydroxy-acetylamino]-N-[4-guanidino-1-(thiazole-2-carbonyl)-butyl]-3-methyl-butyramide
    1zpc: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 2-[2-(3-Chloro-phenyl)-2-hydroxy-acetylamino]-N-[4-guanidino-1-(thiazole-2-carbonyl)-butyl]-3-methyl-butyramide
  • 1zpz: Factor XI catalytic domain complexed with N-((R)-1-(4-bromophenyl)ethyl)urea-Asn-Val-Arg-alpha-ketothiazole
    1zpz: Factor XI catalytic domain complexed with N-((R)-1-(4-bromophenyl)ethyl)urea-Asn-Val-Arg-alpha-ketothiazole
  • 1zrk: Factor XI complexed with 3-hydroxypropyl 3-(7-amidinonaphthalene-1-carboxamido)benzenesulfonate
    1zrk: Factor XI complexed with 3-hydroxypropyl 3-(7-amidinonaphthalene-1-carboxamido)benzenesulfonate
  • 1zsj: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in complex with N-(7-Carbamimidoyl-naphthalen-1-yl)-3-hydroxy-2-methyl-benzamide
    1zsj: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in complex with N-(7-Carbamimidoyl-naphthalen-1-yl)-3-hydroxy-2-methyl-benzamide
  • 1zsk: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 6-Carbamimidoyl-4-(3-hydroxy-2-methyl-benzoylamino)-naphthalene-2-carboxylic acid methyl ester
    1zsk: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 6-Carbamimidoyl-4-(3-hydroxy-2-methyl-benzoylamino)-naphthalene-2-carboxylic acid methyl ester
  • 1zsl: Factor XI complexed with a pyrimidinone inhibitor
    1zsl: Factor XI complexed with a pyrimidinone inhibitor
  • 1ztj: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 2-(5-Benzylamino-2-methylsulfanyl-6-oxo-6H-pyrimidin-1-yl)-N-[4-guanidino-1-(thiazole-2-carbonyl)-butyl]-acetamide
    1ztj: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 2-(5-Benzylamino-2-methylsulfanyl-6-oxo-6H-pyrimidin-1-yl)-N-[4-guanidino-1-(thiazole-2-carbonyl)-butyl]-acetamide
  • 1ztk: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 2-(5-Amino-6-oxo-2-m-tolyl-6H-pyrimidin-1-yl)-N-[4-guanidino-1-(thiazole-2-carbonyl)-butyl]-acetamide
    1ztk: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 2-(5-Amino-6-oxo-2-m-tolyl-6H-pyrimidin-1-yl)-N-[4-guanidino-1-(thiazole-2-carbonyl)-butyl]-acetamide
  • 1ztl: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with N-[4-Guanidino-1-(thiazole-2-carbonyl)-butyl]-2-{6-oxo-5-[(quinolin-8-ylmethyl)-amino]-2-m-tolyl-6H-pyrimidin-1-yl}-acetamide
    1ztl: Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with N-[4-Guanidino-1-(thiazole-2-carbonyl)-butyl]-2-{6-oxo-5-[(quinolin-8-ylmethyl)-amino]-2-m-tolyl-6H-pyrimidin-1-yl}-acetamide
  • 2f83: Crystal structure at 2.9 Angstroms resolution of human plasma coagulation factor XI zymogen
    2f83: Crystal structure at 2.9 Angstroms resolution of human plasma coagulation factor XI zymogen
  • 2fda: Crystal Structure of the Catalytic Domain of Human Coagulation Factor XIa in Complex with alpha-Ketothiazole Arginine Derived Ligand
    2fda: Crystal Structure of the Catalytic Domain of Human Coagulation Factor XIa in Complex with alpha-Ketothiazole Arginine Derived Ligand
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