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ETS transcription factor family

From Wikipedia, the free encyclopedia
Protein family
Protein domain
Ets-domain
Structure of Ets-1 DNA binding autoinhibition.[1]
Identifiers
SymbolEts
PfamPF00178
Pfam clanCL0123
InterProIPR000418
SMARTSM00413
PROSITEPDOC00374
SCOP21r36 /SCOPe /SUPFAM
Available protein structures:
PDB  1awc​,1bc7​,1bc8​,1dux​,1fli​,1gvj​,1hbx​,1k6o​,1k78​,1k79​,1k7a​,1md0​,1mdm​,1pue​,1r36​,1wwx​,1yo5​,2nny​,2stt​,2stwIPR000418PF00178 (ECOD;PDBsum)  
AlphaFold

In the field ofmolecular biology, theETS (E26 transformation-specific[2] orErythroblast Transformation Specific[3])family is one of the largest families oftranscription factors and is unique toanimals. There are 28genes in humans,[4] 27 in the mouse, 10 inCaenorhabditis elegans and 9 inDrosophila. The founding member of this family was identified as a gene transduced by the leukemia virus, E26. The members of the family have been implicated in the development of different tissues as well as cancer progression.

Subfamilies

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The ETS (Erythroblast Transformation Specific)family is divided into 12 subfamilies, which are listed below:[5]

SubfamilyMammalian family membersInvertebrate orthologs
ELFELF1,ELF2 (NERF),ELF4 (MEF)
ELGGABPαELG
ERGERG,FLI1,FEV
ERFERF (PE2),ETV3 (PE1), ETV3L
ESEELF3 (ESE1/ESX),ELF5 (ESE2),ESE3 (EHF)
ETSETS1,ETS2POINTED
PDEFSPDEF (PDEF/PSE)
PEA3ETV4 (PEA3/E1AF),ETV5 (ERM),ETV1 (ER81)
ER71ETV2 (ER71)
SPISPI1 (PU.1),SPIB,SPIC
TCFELK1,ELK4 (SAP1),ELK3 (NET/SAP2)LIN
TELETV6 (TEL),ETV7 (TEL2)YAN

Structure

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All ETS (Erythroblast Transformation Specific) family members are identified through a highly conservedDNA binding domain, theETS domain, which is a wingedhelix-turn-helix structure that binds to DNA sites with a centralGGA(A/T) DNA sequence. As well as DNA-binding functions, evidence suggests that the ETS domain is also involved inprotein-protein interactions.There is limited similarity outside the ETS DNA binding domain.

Other domains are also present and vary from ETS member to ETS member, including the Pointed domain, a subclass of the SAM domain family.

Function

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The ETS family is present throughout the body and is involved in a wide variety of functions including the regulation ofcellular differentiation,cell cycle control,cell migration,cell proliferation,apoptosis (programmed cell death) andangiogenesis.

Multiple ETS factors have been found to be associated with cancer, such as throughgene fusion. For example, theERG ETS transcription factor is fused to theEWS gene, resulting in a condition calledEwing's sarcoma.[6] The fusion ofTEL to theJAK2 protein results in early pre-B acute lymphoid leukaemia.[7] ERG and ETV1 are known gene fusions found inprostate cancer.[8]

In addition, ETS factors, e.g. the vertebrate Etv1 and the invertebrate Ast-1, have been shown to be important players in the specification and differentiation ofdopaminergic neurons in bothC. elegans andolfactory bulbs ofmice.[9]

Mode of action

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Amongst members of the ETS family, there is extensive conservation in the DNA-binding ETS domain and, therefore, a lot of redundancy in DNA binding. It is thought that interactions with other proteins (eg: Modulator of the activity of Ets called Mae) is one way in which specific binding to DNA is achieved. Transcription factor Ets are a site of signalling convergence.[10]ETS factors act as transcriptionalrepressors,transcriptional activators, or both.[11]

References

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  1. ^Lee GM, Donaldson LW, Pufall MA, et al. (February 2005)."The structural and dynamic basis of Ets-1 DNA binding autoinhibition".J. Biol. Chem.280 (8):7088–99.doi:10.1074/jbc.M410722200.PMID 15591056.
  2. ^Nunn, M. F.; Seeburg, P. H.; Moscovici, C.; Duesberg, P. H. (1983). "Tripartite structure of the avian erythroblastosis virus E26 transforming gene".Nature.306 (5941):391–395.Bibcode:1983Natur.306..391N.doi:10.1038/306391a0.PMID 6316155.S2CID 4302399.
  3. ^Leprince, D.; Gegonne, A.; Coll, J.; De Taisne, C.; Schneeberger, A.; Lagrou, C.; Stehelin, D. (1983). "A putative second cell-derived oncogene of the avian leukaemia retrovirus E26".Nature.306 (5941):395–397.Bibcode:1983Natur.306..395L.doi:10.1038/306395a0.PMID 6316156.S2CID 4318034.
  4. ^Sizemore, Gina M.; Pitarresi, Jason R.; Balakrishnan, Subhasree; Ostrowski, Michael C. (June 2017)."The ETS family of oncogenic transcription factors in solid tumours".Nature Reviews Cancer.17 (6):337–351.doi:10.1038/nrc.2017.20.ISSN 1474-1768.PMID 28450705.
  5. ^Gutierrez-Hartman A, Duval DL, Bradford AP (2007). "ETS transcription factors in endocrine systems".Trends Endocrinol Metab.18 (4):150–8.doi:10.1016/j.tem.2007.03.002.PMID 17387021.S2CID 24617218.
  6. ^Ida K, Kobayashi S, Taki T, Hanada R, Bessho F, Yamamori S, Sugimoto T, Ohki M, Hayashi Y (1995). "EWS-FLI-1 and EWS-ERG chimeric mRNAs in Ewing's sarcoma and primitive neuroectodermal tumor".Int J Cancer.63 (4):500–4.doi:10.1002/ijc.2910630407.PMID 7591257.S2CID 24841690.
  7. ^Peeters P, Raynaud SD, Cools J, Wlodarska I, Grosgeorge J, Philip P, Monpoux F, Van Rompaey L, Baens M, Van den Berghe H, Marynen P (1997)."Fusion of TEL, the ETS-variant gene 6 (ETV6), to the receptor-associated kinase JAK2 as a result of t(9;12) in a lymphoid and t(9;15;12) in a myeloid leukemia".Blood.90 (7):2535–40.doi:10.1182/blood.V90.7.2535.PMID 9326218.
  8. ^Tomlins SA, Rhodes DR, Perner S, Dhanasekaran SM, Mehra R, Sun XW, Varambally S, Cao X, Tchinda J, Kuefer R, Lee C, Montie JE, Shah RB, Pienta KJ, Rubin MA, Chinnaiyan AM (October 2005). "Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer".Science.310 (5748):644–8.Bibcode:2005Sci...310..644T.doi:10.1126/science.1117679.PMID 16254181.S2CID 85788789.
  9. ^Flames N, Hobert O (2009)."Gene regulatory logic of dopaminergic neuron differentiation".Nature.458 (7240):885–890.doi:10.1038/nature07929.PMC 2671564.PMID 19287374.
  10. ^Verger A, Duterque-Coquillaud M (2002). "When Ets transcription factors meet their partners".BioEssays.24 (4):362–70.doi:10.1002/bies.10068.PMID 11948622.
  11. ^Sharrocks AD (2001). "The ETS-domain transcription factor family".Nat Rev Mol Cell Biol.2 (11):827–37.doi:10.1038/35099076.PMID 11715049.S2CID 5407789.

Further reading

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(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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