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CHMP5

From Wikipedia, the free encyclopedia
Protein-coding gene in humans
CHMP5
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2LXM,3ULY,3UM0,3UM1,3UM2,4TXR

Identifiers
AliasesCHMP5, C9orf83, HSPC177, PNAS-2, SNF7DC2, Vps60, CGI-34, charged multivesicular body protein 5
External IDsOMIM:610900;MGI:1924209;HomoloGene:5757;GeneCards:CHMP5;OMA:CHMP5 - orthologs
Gene location (Mouse)
Chromosome 4 (mouse)
Chr.Chromosome 4 (mouse)[1]
Chromosome 4 (mouse)
Genomic location for CHMP5
Genomic location for CHMP5
Band4|4 A5Start40,948,407bp[1]
End40,965,303bp[1]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • germinal epithelium

  • palpebral conjunctiva

  • amniotic fluid

  • visceral pleura

  • sperm

  • parietal pleura

  • bronchial epithelial cell

  • endothelial cell

  • jejunal mucosa

  • glomerulus
Top expressed in
  • transitional epithelium of urinary bladder

  • right lung lobe

  • vestibular membrane of cochlear duct

  • pineal gland

  • superior cervical ganglion

  • facial motor nucleus

  • medial ganglionic eminence

  • conjunctival fornix

  • anterior horn of spinal cord

  • gastric mucosa
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

51510

76959

Ensembl

n/a

ENSMUSG00000028419

UniProt

Q9NZZ3

Q9D7S9

RefSeq (mRNA)

NM_016410
NM_001195536

NM_029814

RefSeq (protein)

NP_001182465
NP_057494

NP_084090

Location (UCSC)n/aChr 4: 40.95 – 40.97 Mb
PubMed search[2][3]
Wikidata
View/Edit HumanView/Edit Mouse

Charged multivesicular body protein 5 is aprotein that in humans is encoded by theCHMP5gene.[4][5][6]

Function

[edit]

CHMP5 belongs to thechromatin-modifying protein/charged multivesicular body protein (CHMP) family. These proteins are components ofESCRT-III (endosomal sorting complex required for transport III), a complex involved in degradation of surface receptor proteins and formation of endocytic multivesicular bodies (MVBs). Some CHMPs have both nuclear and cytoplasmic/vesicular distributions, and one such CHMP,CHMP1A, is required for both MVB formation and regulation ofcell cycle progression.[6][7]

References

[edit]
  1. ^abcGRCm38: Ensembl release 89: ENSMUSG00000028419Ensembl, May 2017
  2. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  3. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^Ward DM, Vaughn MB, Shiflett SL, White PL, Pollock AL, Hill J, Schnegelberger R, Sundquist WI, Kaplan J (Mar 2005)."The role of LIP5 and CHMP5 in multivesicular body formation and HIV-1 budding in mammalian cells".J Biol Chem.280 (11):10548–55.doi:10.1074/jbc.M413734200.PMID 15644320.
  5. ^Howard TL, Stauffer DR, Degnin CR, Hollenberg SM (Sep 2001). "CHMP1 functions as a member of a newly defined family of vesicle trafficking proteins".J Cell Sci.114 (Pt 13):2395–404.doi:10.1242/jcs.114.13.2395.PMID 11559748.
  6. ^ab"Entrez Gene: CHMP5 chromatin modifying protein 5".
  7. ^Tsang HT, Connell JW, Brown SE, Thompson A, Reid E, Sanderson CM (September 2006). "A systematic analysis of human CHMP protein interactions: additional MIT domain-containing proteins bind to multiple components of the human ESCRT III complex".Genomics.88 (3):333–46.doi:10.1016/j.ygeno.2006.04.003.PMID 16730941.

External links

[edit]

Further reading

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


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