| 2231-0916 | | |
|
eview Pravas Ranjan Sahoo, Kamadev Sethy, Swagat Mohapatra and Debasis Panda 10.14202/vetworld.2016. Pravas Ranjan Sahoo:Department of Veterinary Biochemistry, Odisha University of Agriculture & Technology, Bhubaneswar, Odisha, India; pravasvet86@gmail.com Kamadev Sethy:Department of Animal Nutrition, Odisha University of Agriculture & Technology, Bhubaneswar, Odisha, India; babuivri@gmail.com Swagat Mohapatra:Department of Veterinary Physiology, Odisha University of Agriculture & Technology, Bhubaneswar, Odisha, India; swagat.physiology@gmail.com Debasis Panda:Department of Veterinary Physiology, Odisha University of Agriculture & Technology, Bhubaneswar, Odisha, India; bapu8280@mail.com Received: 23-02-2016, Accepted: 05-04-2016, Published online: 11-05-2016
Sahoo PR, Sethy K, Mohapatra S, Panda D (2016) Loop mediated isothermal amplification: An innovative gene amplification technique for animal diseases,Veterinary World, 9(5): 465-469.
1. Belak, S., Thoren, P., Leblanc, N. and Viljoen, G. (2009) Advances in viral disease diagnosis and molecular epidemiological technologies. Exp. Rev. Mol. Diagn., 9: 367-381.
http://dx.doi.org/10.1586/erm.09.19
PMid:19435457 | | | 2. Tomita, N., Mori, Y., Kanda, H. and Notomi, T. (2008) Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat. Protoc.,3(5): 877-882.
http://dx.doi.org/10.1038/nprot.2008.57
PMid:18451795 | | | 3. Zhang, X, Lowe, S.B. and Gooding, J.J. (2014) Brief review of monitoring methods for loop-mediated isothermal amplification (LAMP). Biosens. Bioelectron., 61: 491-499.
http://dx.doi.org/10.1016/j.bios.2014.05.039
PMid:24949822 | | | 4. Saharan, P., Dhingolia, S., Khatri, P., Duhan, J.S. and Gahlawat, S.K. (2014) Loop-mediated isothermal amplification (LAMP) based detection of bacteria: A review. Afr. J. Biotechnol., 13(19): 1920-1928.
http://dx.doi.org/10.5897/AJB2013.13459 | | | 5. Parida, M., Sannarangaiah, S., Dash, P.K., Rao, P.V.L. and Morita, K. (2008) Loop mediated isothermal amplification (LAMP): A new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases. Rev. Med. Virol., 18: 407-421.
http://dx.doi.org/10.1002/rmv.593 | | | 6. Njiru, Z.K., Mikosza, A.S., Armstrong, T., Enyaru, J.C., Ndung'u, J.M. and Thompson, A.R. (2008) Loop mediated isothermal amplification (LAMP) method for rapid detection of Trypanosoma brucei rhodesiense. PLoS Negl. Trop. Dis., 2(1): e147.
http://dx.doi.org/10.1371/journal.pntd.0000147 | | | 7. Mori, Y., Hirano, T.and Notomi, T. (2006) Sequence specific visual detection of LAMP reactions by addition of cationic polymers. BMC Biotechnol., 6: 3.
http://dx.doi.org/10.1186/1472-6750-6-3
PMid:16401354 PMCid:PMC1373654 | | | 8. Parida, M.M., Horioke, K., Ishida, H., Dash, P.K., Saxena, P., Jana, A.M., Islam, M.A., Inoue, S., Hosaka, N. and Morita, K. (2005) Rapid detection and differentiation of dengue virus serotypes by a real-time reverse transcription-loop-mediated isothermal amplification assay. J. Clin. Microbiol., 43: 2895-2903.
http://dx.doi.org/10.1128/JCM.43.6.2895-2903.2005
PMid:15956414 PMCid:PMC1151941 | | | | 9. Sen, K.and Ashbolt, N.J. (2011) Environmental Microbiology: Current Technology and Water Application. Caister Academic Press, Norfolk, UK. | | | | 10. Macarthur, G. (2009) Global Health Diagnostics: Research, Development and Regulation. Academy of Medical Sciences Workshop Report (PDF). Academy of Medical Sciences, Great Britain. | | | 11. Dhanasekaran, S., Chandran, S.P. and Kenneth, J. (2011) Efficacy of loop mediated isothermal amplification (LAMP) assay for the laboratory identification of Mycobacterium tuberculosis isolates in a resource limited setting. J. Microbiol. Methods., 84(1): 71-73.
http://dx.doi.org/10.1016/j.mimet.2010.10.015
PMid:21047534 | | | 12. Poon, L.L., Wong, B.W., Ma, E.H., Chan, K.H., Chow, L.M., Abeyewickreme, W., Tangpukdee, N., Yuen, K.Y., Guan, Y., Looareesuwan, S. and Peiris, J.S. (2006) Sensitive and inexpensive molecular test for falciparum malaria: Detecting Plasmodium falciparum DNA directly from heat-treated blood by loop-mediated isothermal amplification. Clin. Chem., 52(2): 303-306.
http://dx.doi.org/10.1373/clinchem.2005.057901
PMid:16339303 | | | 13. Njiru, Z.K., Mikosza, A.S., Matovu, E., Enyaru, J.C., Ouma, J.O., Kibona, S.N., Thompson, R.C. and Ndung'u, J.M. (2008) African trypanosomiasis: Sensitive and rapid detection of the sub-genus Trypanozoon by loop-mediated isothermal amplification (LAMP) of parasite DNA. Int. J. Parasitol., 38(5): 589-599.
http://dx.doi.org/10.1016/j.ijpara.2007.09.006
PMid:17991469 | | | 14. Toriniwa, H. and Komiya, T. (2006) Rapid detection and quantification of Japanese encephalitis virus by real-time reverse transcription loop-mediated isothermal amplification. Microbiol. Immunol., 50(5): 379-387.
http://dx.doi.org/10.1111/j.1348-0421.2006.tb03804.x | | | 15. Parida, M.M., Santhosh, S.R., Dash, P.K., Tripathi, N.K., Saxena, P., Srivastav, A. and Sahni, A.K. (2007) Development and evaluation of reverse transcription loop-mediated isothermal amplification assay for rapid and real-time detection of Japanese encephalitis virus. J. Clin. Microbiol., 44(11): 4172-4178.
http://dx.doi.org/10.1128/JCM.01487-06
PMid:17005741 PMCid:PMC1698363 | | | 16. Parida, M.M., Santhosh, S.R., Dash, P.K., Tripathi, N.K., Lakshmi, V., Mamidi, N., Shrivastva, A., Gupta, N., Saxena, P., Pradeep Babu, J., Lakshmana Rao, P.V. and Morita, K. (2007) Rapid and real-time detection of chikungunya virus by reverse transcription loop mediated isothermal amplification assay. J. Clin. Microbiol., 45(2): 351-357.
http://dx.doi.org/10.1128/JCM.01734-06
PMid:17135444 PMCid:PMC1829040 | | | 17. Imai, M., Ninomiya, A. and Minekawa, H. (2006) Rapid diagnosis of H5N1 avian influenza virus infection by newly developed influenza H5 hemagglutinin gene-specific loop-mediated isothermal amplification method. Vaccine., 24(44-46): 6679-6682.
http://dx.doi.org/10.1016/j.vaccine.2006.05.046
PMid:16797110 | | | 18. Fukuda, S., Takao, S., Kuwayama, M., Shimazu, Y. and Miyazaki, K. (2006) Rapid detection of norovirus from fecal specimens by real-time reverse transcription-loop-mediated isothermal amplification assay. J. Clin. Microbiol., 44(4):1376-1381.
http://dx.doi.org/10.1128/JCM.44.4.1376-1381.2006
PMid:16597865 PMCid:PMC1448634 | | | 19. Hagiwara, M., Sasaki, H., Matsuo, K., Honda, M., Kawase, M. and Nakagawa, H. (2007) Loop mediated isothermal amplification method for detection of human papilloma virus type 6, 11, 16, and 18. J. Med. Virol., 79(5): 605-615.
http://dx.doi.org/10.1002/jmv.20858
PMid:17385684 | | | 20. Mansour, S.M., Ali, H., Chase, C.C. and Cepica, A. (2015) Loop-mediated isothermal amplification for diagnosis of 18 World Organization for Animal Health (OIE) notifiable viral diseases of ruminants, swine and poultry. Anim. Health Res. Rev., 22: 1-18.
http://dx.doi.org/10.1017/s1466252315000018 | | | 21. Dukes, J.P., King, D.P. and Alexandersen, S. (2006) Novel reverse transcription loop-mediated isothermal amplification for rapid detection of foot-and-mouth disease virus. Arch. Virol., 151(6): 1093-1106.
http://dx.doi.org/10.1007/s00705-005-0708-5
PMid:16453084 | | | 22. Soliman, H. and El-Matbouli, M. (2006) Reverse transcription loop-mediated isothermal amplification (RT-LAMP) for rapid detection of viral hemorrhagic septicaemia virus (VHS). Vet. Microbiol., 114(3-4): 205-213.
http://dx.doi.org/10.1016/j.vetmic.2005.11.063
PMid:16384659 | | | 23. Cho, H.S., Kang, J.I. and Park, N.Y. (2006) Detection of canine parvovirus in fecal samples using loop mediated isothermal amplification. J. Vet. Diagn. Invest., 18(1): 81-84.
http://dx.doi.org/10.1177/104063870601800111
PMid:16566261 | | | 24. Chowdry, V.K., Luo, Y., Widén, F., Qiub, H.J., Shan, H., Belák, S. and Liu, L. (2014) Development of a loop-mediated isothermal amplification assay combined with a lateral flow dipstick for rapid and simple detection of classical swine fever virus in the field. J. Virol. Methods., 197: 14-18.
http://dx.doi.org/10.1016/j.jviromet.2013.11.013
PMid:24300833 | | | 25. Raele, D.A., Garofolo, G., Galante, D. and Cafiero, M.A. (2015) Molecular detection of Coxiella burnetii using an alternative loop-mediated isothermal amplification assay (LAMP). Vet. Ital., 51(1): 73-78.
PMid:25842216 | | | 26. Rekha, V., Rana, R., Thomas, P., Viswas, K.N., Singh, V.P., Agarwal, R.K., Arun, T.R., Karthik, K. and Sophia, I. (2015) Development of loop-mediated isothermal amplification test for the diagnosis of contagious agalactia in goats. Trop. Anim. Health Prod., 47(3): 581-587.
http://dx.doi.org/10.1007/s11250-015-0767-x
PMid:25616985 | | | 27. Kursa, O., Woźniakowski, G., Tomczyk, G., Sawicka, A. and Minta, Z. (2015) Rapid detection of mycoplasma synoviae by loop-mediated isothermal amplification. Arch. Microbiol., 197(2): 319-325.
http://dx.doi.org/10.1007/s00203-014-1063-2
PMid:25413672 PMCid:PMC4326666 | | | 28. Karthik, K., Rathore, R., Thomas, P., Arun, T.R., Viswas, K.N., Agarwal, R.K., Manjunathachar, H.V. and Dhama, K. (2014) Loop mediated isothermal amplification (LAMP) test for specific and rapid detection of Brucella abortus in cattle. Vet. Q., 34(4): 174-179.
http://dx.doi.org/10.1080/01652176.2014.966172
PMid:25220872 | | | 29. Woźniakowski, G. and Samorek-Salamonowicz, E. (2014) Direct detection of Marek's disease virus in poultry dust by loop-mediated isothermal amplification. Arch. Virol., 159(11): 3083-3087.
http://dx.doi.org/10.1007/s00705-014-2157-5
PMid:24986718 PMCid:PMC4200374 | | | 30. Zhang, J., Feng, Y., Hu, D., Lv, H., Zhu, J., Cao, M., Zheng, F., Zhu, J., Gong, X., Hao, L., Srinivas, S., Ren, H., Qi, Z., Li, B. and Wang, C. (2013) Rapid and sensitive detection of H7N9 avian influenza virus by use of reverse transcription loop mediated isothermal amplification. J. Clin. Microbiol., 51(11): 3760-3764.
http://dx.doi.org/10.1128/JCM.01907-13
PMid:24006004 PMCid:PMC3889764 | | | 31. Cao, L., Cheng, R., Yao, L., Yuan, S. and Yao, X. (2014) Establishment and application of a loop-mediated isothermal amplification method for simple, specific, sensitive and rapid detection of Toxoplasma gondii. J. Vet. Med. Sci., 76(1): 9-14.
http://dx.doi.org/10.1292/jvms.13-0275
PMCid:PMC3979957 | | | 32. Khan, M.G., Bhaskar, K.R., Salam, M.A., Akther, T., Pluschke, G. and Mondal, D. (2012) Diagnostic accuracy of loop-mediated isothermal amplification (LAMP) for detection of Leishmania DNA in buffy coat from visceral leishmaniasis patients. Parasit. Vectors, 35: 280.
http://dx.doi.org/10.1186/1756-3305-5-280
PMid:23206441 PMCid:PMC3545740 | | | 33. Lenarčič, R., Morisset, D., Pirc, M., Llop, P., Ravnikar, M. and Dreo, T. (2014) Loop-mediated isothermal amplification of specific endo glucanase gene sequence for detection of the bacterial wilt Pathogen R. solanacearum. PLoS One, 9(4):e96027.
http://dx.doi.org/10.1371/journal.pone.0096027
PMid:24763488 PMCid:PMC3999105 | | | 34. Lloyd, A., Pasupuleti, V., Thota, P., Pant, C., Rolston, D.D., Hernandez, A.V., Benites-Zapata, V.A., Fraser, T.G., Donskey, C.J. and Deshpande, A. (2015) Accuracy of loop-mediated isothermal amplification for the diagnosis of Clostridium difficile infection: A systematic review. Diagn. Microbiol. Infect. Dis., 82(1): 4-10.
http://dx.doi.org/10.1016/j.diagmicrobio.2015.02.007
PMid:25752201 | | | 35. Kundapur, R.R. and Nema,V. (2016) Loop-mediated isothermal amplification: Beyond microbial identification. Cogent Biol., 2(1): 1137110.
http://dx.doi.org/10.1080/23312025.2015.1137110 | | | 36. Dhama, K., Karthik, K., Chakraborty, S.,Tiwari, R., Kapoor, S., Kumar, A. and Thomas, P. (2014) Loop-mediated isothermal amplification of DNA (LAMP): A new diagnostic tool lights the world of diagnosis of animal and human pathogens: A review. Pak. J. Biol. Sci., 17(2): 151-166.
http://dx.doi.org/10.3923/pjbs.2014.151.166 | | | 37. Tavares, R.G., Staggemeier, R., Borges, A.L.P., Rodrigues, M.T., Castelan, L.A., Vasconcelos, J., Anschau, M.E. and Spalding, S.M. (2011) Molecular techniques for the study and diagnosis of parasite infection. J.Venom. Anim.Toxins Incl.Trop. Dis., 17(3): 239-248.
http://dx.doi.org/10.1590/S1678-91992011000300003 | | | 38. Nakamura, N., Ito, K., Takahashi, M., Hashimoto, K., Kawamoto, M., Yamanaka, M., Taniguchi, A., Kamatani, N. and Gemma, N. (2007) Detection of six single-nucleotide polymorphisms associated with rheumatoid arthritis by a loop-mediated isothermal amplification method and an electrochemical DNA chip. Anal. Chem.,79(24): 9484-9493.
http://dx.doi.org/10.1021/ac0715468
PMid:17985847 | | | 39. Aikawa, T., Horino, S. and Ichihara, Y. (2015) A novel and rapid diagnostic method for discriminating between feces of Sika deer and Japanese serow by loop-mediated isothermal amplification. Mamm Genome., 26: 355-363.
http://dx.doi.org/10.1007/s00335-015-9572-0
PMid:26084704 | | | 40. Kermekchiev, M.B., Kirilova, L.I., Vail, E.E. and Barnes, W.M. (2009) Mutants of Taq DNA polymerase resistant to PCR inhibitors allows DNA amplification from whole blood and crude soil samples. Nucleic. Acids Res., 37(5): e40.
http://dx.doi.org/10.1093/nar/gkn1055 | | | 41. Torres, C., Vitalis, E.A., Baker, B.R., Gardner, S.N., Torres, M.W. and Dzenitis, J.M. (2011) LAVA: An open-source approach to designing LAMP (loop-mediated isothermal amplification) DNA signatures. BMC Biochem.,12: 240.
http://dx.doi.org/10.1186/1471-2105-12-240 | | | 42. Njiru, Z.K. (2012) Loop-mediated isothermal amplification technology: Toward point of care diagnostics. PLoS Negl. Trop. Dis. 6(6): e1572.
http://dx.doi.org/10.1371/journal.pntd.0001572 |
|
| |
|