Migrating from Cython 0.29 to 3.0

Cython 3.0 is a major revision of the compiler and the languagethat comes with some backwards incompatible changes.This document lists the important ones and explains how to deal withthem in existing code.

Python 3 syntax/semantics

Cython 3.0 now uses Python 3 syntax and semantics by default, which previouslyrequired setting thelanguage_leveldirective <compiler-directives> toeither3 or3str.The new default setting is nowlanguage_level=3str, which means Python 3semantics, but unprefixed strings arestr objects, i.e. unicode text stringsunder Python 3 and byte strings under Python 2.7.

You can revert your code to the previous (Python 2.x) semantics by settinglanguage_level=2.

Further semantic changes due to the language level include:

  • /-division uses the true (float) division operator, unlesscdivision is enabled.

  • print is a function, not a statement.

  • Python classes that are defined without bases (classC:...) are “new-style”classes also in Py2.x (if you never heard about “old-style classes”, you’re probablyhappy without them).

  • Annotations (type hints) are now stored as strings.(PEP 563)

  • StopIteration handling in generators has been changed according toPEP 479.

Python semantics

Some Python compatibility bugs were fixed, e.g.

Binding functions

Thebinding directive is now enabled by default.This makes Cython compiled Python (def) functions mostly compatiblewith normal (non-compiled) Python functions, regarding signature introspection,annotations, etc.

It also makes them bind as methods in Python classes on attribute assignments,thus the name.If this is not intended, i.e. if a function is really meant to be a functionand never a method, you can disable the binding (and all other Python functionfeatures) by settingbinding=False or selectively adding a decorator@cython.binding(False).In pure Python mode, the decorator was not available in Cython 0.29.16 yet,but compiled code does not suffer from this.

We recommend, however, to keep the new function features and instead dealwith the binding issue using the standard Pythonstaticmethod() builtin.

deffunc(self,b):...classMyClass(object):binding_method=funcno_method=staticmethod(func)

Namespace packages

Cython now has support for loading pxd files also from namespace packagesaccording toPEP-420.This might have an impact on the import path.

NumPy C-API

Cython used to generate code that depended on the deprecated pre-NumPy-1.7 C-API.This is no longer the case with Cython 3.0.

You can now define the macroNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSIONto get rid of the long-standing build warnings that the compiled C moduleuses a deprecated API. Either per file:

# distutils: define_macros=NPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION

or by setting it in your Extensions insetup.py:

Extension(...define_macros=[("NPY_NO_DEPRECATED_API","NPY_1_7_API_VERSION")])

One side-effect of the different C-API usage is that your code may nowrequire a call to theNumPy C-API initialisation functionwhere it previously got away without doing so.

In order to reduce the user impact here, Cython 3.0 will now call itautomatically when it seesnumpy being cimported, but the functionnot being used.In the (hopefully rare) cases where this gets in the way, the internalC-API initialisation can be disabled by faking the use of the functionwithout actually calling it, e.g.

# Explicitly disable the automatic initialisation of NumPy's C-API.<void>import_array

Class-private name mangling

Cython has been updated to follow thePython rules for class-private namesmore closely. Essentially any name that starts with and doesn’t end with__ within a class is mangled with the class name. Most user codeshould be unaffected – unlike in Python unmangled global names willstill be matched to ensure it is possible to access C namesbeginning with__:

cdefexternvoid__foo()classC:# or "cdef class"defcall_foo(self):return__foo()# still calls the global name

What will no-longer work is overriding methods starting with__ inacdefclass:

cdefclassBase:cdef__bar(self):return1defcall_bar(self):returnself.__bar()cdefclassDerived(Base):cdef__bar(self):return2

HereBase.__bar is mangled to_Base__bar andDerived.__barto_Derived__bar. Thereforecall_bar will always call_Base__bar. This matches established Python behaviour and appliesfordef,cdef andcpdef methods and attributes.

Arithmetic special methods

The behaviour of arithmetic special methods (for example__add__and__pow__) of cdef classes has changed in Cython 3.0. They nowsupport separate “reversed” versions of these methods (e.g.__radd__,__rpow__) that behave like in pure Python.The main incompatible change is that the type of the first operand(usually__self__) is now assumed to be that of the defining class,rather than relying on the user to test and cast the type of each operand.

The old behaviour can be restored with thedirectivec_api_binop_methods=True.More details are given inArithmetic methods.

Exception values andnoexcept

cdef functions that are notextern now safely propagate Pythonexceptions by default. Previously, they needed to explicitly be declaredwith anexception value to prevent them fromswallowing exceptions. A newnoexcept modifier can be used to declarecdef functions that really will not raise exceptions.

In existing code, you should mainly look out forcdef functionsthat are declared without an exception value:

cdefintspam(intx):passcdefvoidsilent(intx):pass

If you left out the exception value by mistake, i.e., the functionshould propagate Python exceptions, then the new behaviour will takecare of this for you, and correctly propagate any exceptions.This was a common mistake in Cython code and the main reason to change the behaviour.

On the other hand, if you didn’t declare an exception value becauseyou want to avoid exceptions propagating out of this function, the new behaviourwill result in slightly less efficient code being generated, now involving an exception check.To prevent that, you must declare the function explicitly as beingnoexcept:

cdefintspam(intx)noexcept:passcdefvoidsilent(intx)noexcept:pass

The behaviour forcdef functions that are alsoextern isunchanged asextern functions are less likely to raise Pythonexceptions and rather tend to be plain C functions. This mitigatesthe effect of this change for code that talks to C libraries.

The behaviour for anycdef function that is declared with anexplicit exception value (e.g.,cdefintspam(intx)except-1) isalso unchanged.

There is an easy-to-encounter performance pitfall here withnogil functionswith an implicit exception specification ofexcept*. This can happenmost commonly when the return type isvoid (but in principle appliesto most non-numeric return types). In this case, Cython is forced tore-acquire the GIL brieflyafter each call to check the exception state.To avoid this overhead, either change the signature tonoexcept (ifyou have determined that it’s suitable to do so), or to returning anintinstead to let Cython use theint as an error flag(by default,-1 triggers the exception check).

Note

The unsafe legacy behaviour of not propagating exceptions by default can be enabled bysettinglegacy_implicit_noexceptcompiler directivetoTrue.

Annotation typing

Cython 3 has made substantial improvements in recognising types inannotations and it is well worth readingthe pure Python tutorial to understandsome of the improvements.

A notable backwards-incompatible change is thatx:int is now typedsuch thatx is an exact Pythonint (Cython 0.29 would acceptany Python object forx), unless the language level is explicitlyset to 2. To mitigate the effect, Cython 3.0 still accepts both Pythonint andlong values under Python 2.x.

One potential issue you may encounter is that types liketyping.Listare now understood in annotations (where previously they were ignored)and are interpreted to meanexactlist. This is stricter thanthe interpretation specified in PEP-484, which also allows subclasses.

To make it easier to handle cases where your interpretation of typeannotations differs from Cython’s, Cython 3 now supports setting theannotation_typingdirective on aper-class or per-function level.

C++ postincrement/postdecrement operator

Cython 3 differentiates between pre/post-increment and pre/post-decrementoperators (Cython 0.29 implemented both as pre(in/de)crement operator).This only has an effect when usingcython.operator.postdecrement /cython.operator.postincrement.When running into an error it is required to add the corresponding operator:

cdefcppclassExample:Exampleoperator++(int)Exampleoperator--(int)

Public Declarations in C++

Public declarations in C++ mode are exported as C++ API in Cython 3, usingextern"C++".This behaviour can be changed by setting the export keyword using theCYTHON_EXTERN_C macroto allow Cython modules to be implemented in C++ but callable from C.

** power operator

Cython 3 has changed the behaviour of the power operator to bemore like Python. The consequences are that

  1. a**b of two ints may return a floating point type,

  2. a**b of one or more non-complex floating point numbers mayreturn a complex number.

The old behaviour can be restored by setting thecpowcompiler directive toTrue.

Deprecation ofDEF /IF

Theconditional compilation feature has beendeprecated and should no longer be used in new code.It is expected to get removed in some future release.

Usages ofDEF should be replaced by:

  • global cdef constants

  • global enums (C or Python)

  • C macros, e.g. defined inverbatim C code

  • the usual Python mechanisms for sharing values across modules and usages

Usages ofIF should be replaced by:

  • runtime conditions and conditional Python imports (i.e. the usual Python patterns)

  • leaving out unused C struct field names from a Cython extern struct definition(which does not have to be complete)

  • redefining an extern struct type under different Cython names,with different (e.g. version/platform dependent) attributes,but with thesame cname string.

  • separating out optional (non-trivial) functionality into optional Cython modulesand importing/using them at need (with regular runtime Python imports)

  • code generation, as a last resort