copyseparator: Assembling Long Gene Copies from Short Read Data
Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.
| Version: | 1.2.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ape,seqinr,stringr,kmer,DECIPHER,beepr,Biostrings, grDevices,doParallel,foreach, parallel |
| Suggests: | knitr,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2022-11-25 |
| DOI: | 10.32614/CRAN.package.copyseparator |
| Author: | Lei Yang |
| Maintainer: | Lei Yang <leiyangslu at gmail.com> |
| BugReports: | https://github.com/LeiYang-Fish/copyseparator/issues |
| License: | GPL-2 |
| URL: | https://github.com/LeiYang-Fish/copyseparator |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | copyseparator results |
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