Analysis of minor alleles in Illumina sequencing data of viral genomes. Functions in 'vivaldi' primarily operate on vcf files.
| Version: | 1.0.1 |
| Depends: | R (≥ 2.10) |
| Imports: | dplyr (≥ 1.0.2),ggplot2 (≥ 3.3.2),glue (≥ 1.4.2),magrittr (≥ 2.0.1),plotly (≥ 4.10.0),seqinr (≥ 4.2-8),tidyr (≥ 1.1.2),tidyselect (≥ 1.1.2),vcfR (≥ 1.12.0) |
| Suggests: | kableExtra,knitr,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2023-03-21 |
| DOI: | 10.32614/CRAN.package.vivaldi |
| Author: | Marissa Knoll [aut], Katherine Johnson [aut], Megan Hockman [aut], Eric Borenstein [aut], Mohammed Khalfan [aut], Elodie Ghedin [aut], David Gresham [aut, cre, cph] |
| Maintainer: | David Gresham <dg107 at nyu.edu> |
| BugReports: | https://github.com/GreshamLab/vivaldi/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/GreshamLab/vivaldi |
| NeedsCompilation: | no |
| Citation: | vivaldi citation info |
| Materials: | README |
| CRAN checks: | vivaldi results |