LDATS: Latent Dirichlet Allocation Coupled with Time Series Analyses
Combines Latent Dirichlet Allocation (LDA) and Bayesian multinomial time series methods in a two-stage analysis to quantify dynamics in high-dimensional temporal data. LDA decomposes multivariate data into lower-dimension latent groupings, whose relative proportions are modeled using generalized Bayesian time series models that include abrupt changepoints and smooth dynamics. The methods are described in Blei et al. (2003) <doi:10.1162/jmlr.2003.3.4-5.993>, Western and Kleykamp (2004) <doi:10.1093/pan/mph023>, Venables and Ripley (2002, ISBN-13:978-0387954578), and Christensen et al. (2018) <doi:10.1002/ecy.2373>.
| Version: | 0.3.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | coda,digest,extraDistr, graphics, grDevices,lubridate,magrittr,memoise, methods,mvtnorm,nnet,progress, stats,topicmodels,viridis |
| Suggests: | knitr,pkgdown,rmarkdown,testthat,vdiffr |
| Published: | 2023-09-19 |
| DOI: | 10.32614/CRAN.package.LDATS |
| Author: | Juniper L. Simonis [aut, cre], Erica M. Christensen [aut], David J. Harris [aut], Renata M. Diaz [aut], Hao Ye [aut], Ethan P. White [aut], S.K. Morgan Ernest [aut], Weecology [cph] |
| Maintainer: | Juniper L. Simonis <juniper.simonis at weecology.org> |
| BugReports: | https://github.com/weecology/LDATS/issues |
| License: | MIT + fileLICENSE |
| URL: | https://weecology.github.io/LDATS/,https://github.com/weecology/LDATS |
| NeedsCompilation: | no |
| SystemRequirements: | gsl |
| Materials: | README,NEWS |
| CRAN checks: | LDATS results |
Documentation:
| Reference manual: | LDATS.html ,LDATS.pdf |
| Vignettes: | LDATS Codebase (source,R code) Comparison to Christensen et al. 2018 (source,R code) Rodents Example (source,R code) |
Downloads:
| Package source: | LDATS_0.3.0.tar.gz |
| Windows binaries: | r-devel:LDATS_0.3.0.zip, r-release:LDATS_0.3.0.zip, r-oldrel:LDATS_0.3.0.zip |
| macOS binaries: | r-release (arm64):LDATS_0.3.0.tgz, r-oldrel (arm64):LDATS_0.3.0.tgz, r-release (x86_64):LDATS_0.3.0.tgz, r-oldrel (x86_64):LDATS_0.3.0.tgz |
| Old sources: | LDATS archive |
Reverse dependencies:
| Reverse imports: | argminCS |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=LDATSto link to this page.