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phylobase: Base Package for Phylogenetic Structures and Comparative Data

Provides a base S4 class for comparative methods, incorporating one or more trees and trait data.

Version:0.8.12
Imports:ade4,ape (≥ 3.0),Rcpp (≥ 0.11.0),rncl (≥ 0.6.0), grid, methods, stats,RNeXML
LinkingTo:Rcpp
Suggests:MASS,testthat (≥ 0.8.1),knitr,rmarkdown
Published:2024-01-30
DOI:10.32614/CRAN.package.phylobase
Author:R Hackathon et al. (alphabetically: Ben Bolker, Marguerite Butler, Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara, Emmanuel Paradis, Jim Regetz, Derrick Zwickl)
Maintainer:Francois Michonneau <francois.michonneau at gmail.com>
BugReports:https://github.com/fmichonneau/phylobase/issues
License:GPL-2 |GPL-3 [expanded from: GPL (≥ 2)]
URL:https://github.com/fmichonneau/phylobase
NeedsCompilation:yes
Materials:README,NEWS
In views:Phylogenetics
CRAN checks:phylobase results

Documentation:

Reference manual:phylobase.html ,phylobase.pdf
Vignettes:The phylo4 classes and methods (source)

Downloads:

Package source: phylobase_0.8.12.tar.gz
Windows binaries: r-devel:phylobase_0.8.12.zip, r-release:phylobase_0.8.12.zip, r-oldrel:phylobase_0.8.12.zip
macOS binaries: r-release (arm64):phylobase_0.8.12.tgz, r-oldrel (arm64):phylobase_0.8.12.tgz, r-release (x86_64):phylobase_0.8.12.tgz, r-oldrel (x86_64):phylobase_0.8.12.tgz
Old sources: phylobase archive

Reverse dependencies:

Reverse imports:adephylo,adiv,clusterExperiment,DAISIEprep,ddtlcm,nodeSub,PCPS,phyext2,phylocanvas,phylosem,phylosignal,phyloTop
Reverse suggests:ecostats,phyloraster,RAINBOWR,rotl

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=phylobaseto link to this page.


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