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rnnmf: Regularized Non-Negative Matrix Factorization

A proof of concept implementation of regularized non-negative matrix factorization optimization. A non-negative matrix factorization factors non-negative matrix Y approximately as L R, for non-negative matrices L and R of reduced rank. This package supports such factorizations with weighted objective and regularization penalties. Allowable regularization penalties include L1 and L2 penalties on L and R, as well as non-orthogonality penalties. This package provides multiplicative update algorithms, which are a modification of the algorithm of Lee and Seung (2001) <http://papers.nips.cc/paper/1861-algorithms-for-non-negative-matrix-factorization.pdf>, as well as an additive update derived from that multiplicative update. See also Pav (2004) <doi:10.48550/arXiv.2410.22698>.

Version:0.3.0
Depends:R (≥ 3.0.2)
Imports:Matrix
Suggests:testthat,dplyr,ggplot2,scales,viridis,knitr
Published:2024-11-04
DOI:10.32614/CRAN.package.rnnmf
Author:Steven E. PavORCID iD [aut, cre]
Maintainer:Steven E. Pav <shabbychef at gmail.com>
BugReports:https://github.com/shabbychef/rnnmf/issues
License:LGPL-3
URL:https://github.com/shabbychef/rnnmf
NeedsCompilation:no
Citation:rnnmf citation info
Materials:README,ChangeLog
CRAN checks:rnnmf results

Documentation:

Reference manual:rnnmf.html ,rnnmf.pdf
Vignettes:An Iterative Algorithm for Regularized Non-negative Matrix Factorizations (source,R code)

Downloads:

Package source: rnnmf_0.3.0.tar.gz
Windows binaries: r-devel:rnnmf_0.3.0.zip, r-release:rnnmf_0.3.0.zip, r-oldrel:rnnmf_0.3.0.zip
macOS binaries: r-release (arm64):rnnmf_0.3.0.tgz, r-oldrel (arm64):rnnmf_0.3.0.tgz, r-release (x86_64):rnnmf_0.3.0.tgz, r-oldrel (x86_64):rnnmf_0.3.0.tgz

Linking:

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