Functions for fitting various models to capture-recapture data including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and the multi-variate state model structure for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. There are also Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty and a simulation capability for HMM models.
| Version: | 1.2.8 |
| Depends: | R (≥ 3.5.0),lme4, methods, parallel |
| Imports: | graphics, stats, utils,R2admb,truncnorm,coda,Matrix,numDeriv,expm,Rcpp (≥ 0.9.13),TMB,optimx (≥ 2013.8.6),data.table,knitr,kableExtra,bookdown |
| LinkingTo: | Rcpp |
| Suggests: | ggplot2 |
| Published: | 2023-10-19 |
| DOI: | 10.32614/CRAN.package.marked |
| Author: | Jeff Laake, Devin Johnson, Paul Conn, example for simHMM from Jay Rotella |
| Maintainer: | Jeff Laake <jefflaake at gmail.com> |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| SystemRequirements: | ADMB version 11 <http://admb-project.org/> foruse.admb=TRUE; see readme.txt |
| Citation: | marked citation info |
| Materials: | NEWS |
| In views: | Environmetrics |
| CRAN checks: | marked results |