A 'shiny' app that supports both dual and bulk RNA-seq, with the dual RNA-seq functionality offering the flexibility to perform either a sequential approach (where reads are mapped separately to each genome) or a combined approach (where reads are aligned to a single merged genome). The user-friendly interface automates the analysis process, providing step-by-step guidance, making it easy for users to navigate between different analysis steps, and download intermediate results and publication-ready plots.
| Version: | 1.0.3 |
| Imports: | bigtabulate,bsicons,bslib,callr,checkmate,data.table,dplyr,DT,fs,ggplot2,ggrepel, grDevices,heatmaply,Hmisc,htmltools,magrittr,matrixStats,memuse, methods,paletteer, parallel,pheatmap,plotly,R.devices,readr,reshape2,rintrojs,seqinr,shiny,shinycssloaders,shinyFiles,shinyjs,shinyWidgets,spsComps, stats,svglite,tibble,tidyr, tools,upsetjs,UpSetR, utils |
| Suggests: | BiocGenerics,BiocManager,Biostrings,edgeR,harrypotter,HTSFilter,limma,oompaBase,palr,Rsamtools,Rsubread,rtracklayer,S4Vectors,ShortRead,testthat (≥ 3.0.0),XVector |
| Published: | 2025-10-21 |
| DOI: | 10.32614/CRAN.package.inDAGO |
| Author: | Carmine Fruggiero [aut, cre], Gaetano Aufiero [aut] |
| Maintainer: | Carmine Fruggiero <fruggierocarmine3 at gmail.com> |
| BugReports: | https://github.com/inDAGOverse/inDAGO/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/inDAGOverse/inDAGO |
| NeedsCompilation: | no |
| CRAN checks: | inDAGO results |