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MEGENA: Multiscale Clustering of Geometrical Network

Co-Expression Network Analysis by adopting network embedding technique. Song W.-M., Zhang B. (2015) Multiscale Embedded Gene Co-expression Network Analysis. PLoS Comput Biol 11(11): e1004574. <doi:10.1371/journal.pcbi.1004574>.

Version:1.3.7
Depends:R (≥ 3.4.0),doParallel (≥ 1.0.11),foreach (≥ 1.4.4),igraph (≥ 1.2.1)
Imports:Rcpp (≥ 0.11.3),Matrix (≥ 1.1-5),ggplot2 (≥ 1.0.0),reshape (≥ 0.8.5),fpc (≥ 2.1-11),cluster (≥ 2.0.7-1),ggrepel (≥0.5),ggraph (≥ 1.0.1)
LinkingTo:Rcpp,BH
Suggests:knitr,rmarkdown
Published:2018-09-10
DOI:10.32614/CRAN.package.MEGENA
Author:Won-Min Song, Bin Zhang
Maintainer:Won-Min Song <wonmin1984 at gmail.com>
License:GPL (≥ 3)
URL:https://github.com/songw01/MEGENA
NeedsCompilation:yes
Materials:README
CRAN checks:MEGENA results

Documentation:

Reference manual:MEGENA.html ,MEGENA.pdf
Vignettes:MEGENA pipeline overview (source,R code)

Downloads:

Package source: MEGENA_1.3.7.tar.gz
Windows binaries: r-devel:MEGENA_1.3.7.zip, r-release:MEGENA_1.3.7.zip, r-oldrel:MEGENA_1.3.7.zip
macOS binaries: r-release (arm64):MEGENA_1.3.7.tgz, r-oldrel (arm64):MEGENA_1.3.7.tgz, r-release (x86_64):MEGENA_1.3.7.tgz, r-oldrel (x86_64):MEGENA_1.3.7.tgz
Old sources: MEGENA archive

Reverse dependencies:

Reverse imports:DDPNA

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=MEGENAto link to this page.


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