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SHARK4R: Accessing and Validating Marine Environmental Data from 'SHARK'and Related Databases

Provides functions to retrieve, process, analyze, and quality-control marine physical, chemical, and biological data. The main focus is on Swedish monitoring data available through the 'SHARK' database <https://shark.smhi.se/en/>, with additional API support for 'Nordic Microalgae' <https://nordicmicroalgae.org/>, 'Dyntaxa' <https://artfakta.se/>, World Register of Marine Species ('WoRMS') <https://www.marinespecies.org>, 'AlgaeBase' <https://www.algaebase.org>, OBIS 'xylookup' web service <https://iobis.github.io/xylookup/> and Intergovernmental Oceanographic Commission (IOC) - UNESCO databases on harmful algae <https://www.marinespecies.org/hab/> and toxins <https://toxins.hais.ioc-unesco.org/>.

Version:1.0.2
Depends:R (≥ 4.1.0)
Imports:dplyr,DT,ggplot2,httr,jsonlite,leaflet,lifecycle,purrr,readr,readxl,rlang,sf,sp,stringi,terra,tidyr,vroom,worrms
Suggests:htmltools,iRfcb,knitr,plotly,RColorBrewer,rmarkdown,skimr,spelling,shiny,shinythemes,testthat (≥ 3.0.0)
Published:2025-12-12
DOI:10.32614/CRAN.package.SHARK4R
Author:Markus LindhORCID iD [aut] (Swedish Meteorological and Hydrological Institute), Anders TorstenssonORCID iD [aut, cre] (Swedish Meteorological and Hydrological Institute), Mikael HedblomORCID iD [ctb] (Swedish Meteorological and Hydrological Institute), Bengt KarlsonORCID iD [ctb] (Swedish Meteorological and Hydrological Institute), SHARK [cph], SBDI [fnd] (Swedish Research Council, 2019-00242)
Maintainer:Anders Torstensson <anders.torstensson at smhi.se>
BugReports:https://github.com/sharksmhi/SHARK4R/issues
License:MIT + fileLICENSE
URL:https://sharksmhi.github.io/SHARK4R/,https://github.com/sharksmhi/SHARK4R
NeedsCompilation:no
Language:en-US
Citation:SHARK4R citation info
Materials:README,NEWS
CRAN checks:SHARK4R results

Documentation:

Reference manual:SHARK4R.html ,SHARK4R.pdf
Vignettes:Quality Control of SHARK Data (source,R code)
Retrieve HAB Data From IOC-UNESCO Databases (source,R code)
Retrieve Data From Nordic Microalgae (source,R code)
Retrieve Data From SHARK (source,R code)
Retrieve Taxonomic Data From WoRMS (source,R code)

Downloads:

Package source: SHARK4R_1.0.2.tar.gz
Windows binaries: r-devel:SHARK4R_1.0.2.zip, r-release:SHARK4R_1.0.2.zip, r-oldrel:SHARK4R_1.0.2.zip
macOS binaries: r-release (arm64):SHARK4R_1.0.2.tgz, r-oldrel (arm64):SHARK4R_1.0.2.tgz, r-release (x86_64):SHARK4R_1.0.2.tgz, r-oldrel (x86_64):SHARK4R_1.0.2.tgz
Old sources: SHARK4R archive

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=SHARK4Rto link to this page.


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