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News for packagescGate

New in version 1.7.0

• Update maintainer emails

• Bug fixes

New in version 1.6.2

• Enable parallelization over a list of scGate models (in multi-classifier mode)

• Fix bug on parallelization when specifying BPPARAM

• Added cell ontology links for controlled cell type dictionary

• Update accessor functions for compatibility with Seurat v5

New in version 1.4.0

• Use functionSmoothKNN() from theUCell package for nearest neighbor smoothing of signature scores

• Clean up code for CRAN submission

New in version 1.2.0

• Simultaneously evaluate multiple gating models, given as a list to model parameter. This returns individual gatings as well as a combined cell type annotation from all the models (scGate_multi metadata column), and allows running scGate as a multi-class classifier and annotate cell types in a dataset.

• Newreduction parameter: this i) Allows nearest-neighbor smoothing on an existing dimensionality reduction (e.g. "pca" or "harmony") and ii) Can significantly speed up computation time and annotation of integrated objects