Fit Bayesian hierarchical models of animal abundance and occurrence via the 'rstan' package, the R interface to the 'Stan' C++ library. Supported models include single-season occupancy, dynamic occupancy, and N-mixture abundance models. Covariates on model parameters are specified using a formula-based interface similar to package 'unmarked', while also allowing for estimation of random slope and intercept terms. References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
| Version: | 1.2.8 |
| Depends: | R (≥ 3.4.0),unmarked |
| Imports: | ggplot2 (≥ 2.0.0),gridExtra,loo,Matrix (≥ 1.5-0), methods,pbapply,Rcpp (≥ 0.12.0),reformulas,rlang,RSpectra,rstan (≥ 2.26.0),rstantools (≥ 2.0.0), stats |
| LinkingTo: | BH (≥ 1.66.0),Rcpp (≥ 0.12.0),RcppArmadillo (≥0.9.300.2.0),RcppEigen (≥ 0.3.3.3.0),rstan (≥ 2.26.0),StanHeaders (≥ 2.26.0),RcppParallel (≥ 5.0.2) |
| Suggests: | knitr,raster,rmarkdown,terra,testthat |
| Published: | 2025-09-29 |
| DOI: | 10.32614/CRAN.package.ubms |
| Author: | Ken Kellner [cre, aut] |
| Maintainer: | Ken Kellner <contact at kenkellner.com> |
| BugReports: | https://github.com/ecoverseR/ubms/issues |
| License: | GPL (≥ 3) |
| URL: | https://ecoverseR.github.io/ubms/ |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Citation: | ubms citation info |
| Materials: | NEWS |
| CRAN checks: | ubms results |
| Reference manual: | ubms.html ,ubms.pdf |
| Vignettes: | Comparing models fit in ubms and JAGS (source) Random effects in ubms (source) Spatial Models in ubms (source) Overview of ubms (source,R code) |
| Package source: | ubms_1.2.8.tar.gz |
| Windows binaries: | r-devel:ubms_1.2.8.zip, r-release:ubms_1.2.8.zip, r-oldrel:ubms_1.2.8.zip |
| macOS binaries: | r-release (arm64):ubms_1.2.8.tgz, r-oldrel (arm64):ubms_1.2.8.tgz, r-release (x86_64):ubms_1.2.8.tgz, r-oldrel (x86_64):ubms_1.2.8.tgz |
| Old sources: | ubms archive |
| Reverse suggests: | camtrapR |
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