simulist: Simulate Disease Outbreak Line List and Contacts Data
Tools to simulate realistic raw case data for an epidemic in the form of line lists and contacts using a branching process. Simulated outbreaks are parameterised with epidemiological parameters and can have age-structured populations, age-stratified hospitalisation and death risk and time-varying case fatality risk.
| Version: | 0.6.0 |
| Depends: | R (≥ 4.2.0) |
| Imports: | checkmate,english,epiparameter (≥ 0.4.0),grates,randomNames,rlang, stats |
| Suggests: | dplyr,epicontacts (≥ 1.1.3),ggplot2,incidence2 (≥2.6.2),knitr,rmarkdown,spelling,testthat (≥ 3.0.0),tidyr |
| Published: | 2025-08-28 |
| DOI: | 10.32614/CRAN.package.simulist |
| Author: | Joshua W. Lambert [aut, cre, cph], Carmen Tamayo Cuartero [aut], Hugo Gruson [ctb, rev], Pratik R. Gupte [ctb, rev], Adam Kucharski [rev], Chris Hartgerink [rev], Sebastian Funk [ctb], London School of Hygiene and Tropical Medicine, LSHTM [cph] |
| Maintainer: | Joshua W. Lambert <joshua.lambert at lshtm.ac.uk> |
| BugReports: | https://github.com/epiverse-trace/simulist/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/epiverse-trace/simulist,https://epiverse-trace.github.io/simulist/ |
| NeedsCompilation: | no |
| Language: | en-GB |
| Citation: | simulist citation info |
| Materials: | README,NEWS |
| In views: | Epidemiology |
| CRAN checks: | simulist results |
Documentation:
Downloads:
| Package source: | simulist_0.6.0.tar.gz |
| Windows binaries: | r-devel:simulist_0.6.0.zip, r-release:simulist_0.6.0.zip, r-oldrel:simulist_0.6.0.zip |
| macOS binaries: | r-release (arm64):simulist_0.6.0.tgz, r-oldrel (arm64):simulist_0.6.0.tgz, r-release (x86_64):simulist_0.6.0.tgz, r-oldrel (x86_64):simulist_0.6.0.tgz |
| Old sources: | simulist archive |
Linking:
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