Non-linear/linear hybrid method for batch-effect correction that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) <doi:10.1093/nargab/lqac022>.
| Version: | 0.2.5 |
| Depends: | R (≥ 3.5.0) |
| Imports: | FNN,irlba,numbers,fpc,bluster,igraph,matrixStats, utils |
| Suggests: | testthat (≥ 2.1.0),Seurat,SingleCellExperiment,SummarizedExperiment,scater,batchelor,scran,knitr,rmarkdown,patchwork,ggplot2 |
| Published: | 2023-12-08 |
| DOI: | 10.32614/CRAN.package.Canek |
| Author: | Martin Loza [aut, cre], Diego Diez [aut] |
| Maintainer: | Martin Loza <martin.loza.lopez at gmail.com> |
| BugReports: | https://github.com/MartinLoza/Canek/issues |
| License: | MIT + fileLICENSE |
| URL: | https://martinloza.github.io/Canek/ |
| NeedsCompilation: | no |
| Citation: | Canek citation info |
| Materials: | README,NEWS |
| CRAN checks: | Canek results |