Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).
| Version: | 1.2.8 |
| Depends: | R (≥ 3.4) |
| Imports: | methods,RColorBrewer,ape,ggnetwork,ggplot2,ggraph,igraph,network,phangorn,stringdist,visNetwork,reshape2,S4Vectors,shiny,ggtree,dplyr,VennDiagram,futile.logger,future,future.apply, tools,ShortRead,Biostrings |
| Suggests: | BiocManager,testthat,knitr,rmarkdown |
| Published: | 2025-03-10 |
| DOI: | 10.32614/CRAN.package.genBaRcode |
| Author: | Lars Thielecke [aut, cre] |
| Maintainer: | Lars Thielecke <lars.thielecke at tu-dresden.de> |
| License: | LGPL-2 |LGPL-2.1 |LGPL-3 [expanded from: LGPL] |
| NeedsCompilation: | no |
| CRAN checks: | genBaRcode results |
| Reference manual: | genBaRcode.html ,genBaRcode.pdf |
| Vignettes: | Introduction to the genBaRcode GUI (source,R code) Introduction to genBaRcode (source,R code) |
| Package source: | genBaRcode_1.2.8.tar.gz |
| Windows binaries: | r-devel:genBaRcode_1.2.8.zip, r-release:genBaRcode_1.2.8.zip, r-oldrel:genBaRcode_1.2.8.zip |
| macOS binaries: | r-release (arm64):genBaRcode_1.2.8.tgz, r-oldrel (arm64):genBaRcode_1.2.8.tgz, r-release (x86_64):genBaRcode_1.2.8.tgz, r-oldrel (x86_64):genBaRcode_1.2.8.tgz |
| Old sources: | genBaRcode archive |
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