Processing and analysis of targeted sequencing data. The package provides a user-friendly interface for core 'VSEARCH' (Rognes et al. (2016), <doi:10.7717/peerj.2584>) functions, in addition to tools for visualization and parameter tuning.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.1) |
| Imports: | ape (≥ 5.8.1),cowplot (≥ 1.1.3),dplyr,ggExtra (≥0.10.1),ggplot2 (≥ 3.5.1),microseq (≥ 2.1.6),phyloseq (≥1.50.0),RColorBrewer (≥ 1.1.3),readr (≥ 2.1.5), stats,stringr (≥ 1.5.1),tibble (≥ 3.2.1),tidyr (≥ 1.3.1) |
| Suggests: | rmarkdown,testthat (≥ 3.0.0),withr (≥ 3.0.2) |
| Published: | 2025-10-26 |
| DOI: | 10.32614/CRAN.package.Rsearch |
| Author: | Cassandra Stamsaas [cre, aut], Lars Snipen [aut], Torbjørn Rognes [aut], Hilde Vinje [aut] |
| Maintainer: | Cassandra Stamsaas <cassandra.hjortdahl at nmbu.no> |
| BugReports: | https://github.com/CassandraHjo/Rsearch/issues/ |
| License: | GPL (≥ 3) |
| URL: | https://cassandrahjo.github.io/Rsearch/,https://github.com/CassandraHjo/Rsearch/ |
| NeedsCompilation: | no |
| CRAN checks: | Rsearch results |