qtl2pleio: Testing Pleiotropy in Multiparental Populations
We implement an adaptation of Jiang & Zeng's (1995) <https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing the null hypothesis of pleiotropy against the alternative hypothesis, two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) <https://www.genetics.org/content/140/3/1111> and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in that our test accommodates multiparental populations.
| Version: | 1.4.3 |
| Depends: | R (≥ 3.2) |
| Imports: | dplyr,gemma2,ggplot2,magrittr,MASS,Rcpp,rlang,tibble, parallel |
| LinkingTo: | Rcpp,RcppEigen |
| Suggests: | covr,mvtnorm,knitr,rmarkdown,testthat,broman,devtools,qtl2,parallelly |
| Published: | 2020-12-02 |
| DOI: | 10.32614/CRAN.package.qtl2pleio |
| Author: | Frederick J Boehm [aut, cre] |
| Maintainer: | Frederick J Boehm <frederick.boehm at gmail.com> |
| BugReports: | https://github.com/fboehm/qtl2pleio/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/fboehm/qtl2pleio |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | qtl2pleio citation info |
| Materials: | README,NEWS |
| CRAN checks: | qtl2pleio results |
Documentation:
| Reference manual: | qtl2pleio.html ,qtl2pleio.pdf |
| Vignettes: | Using HTCondor for bootstrap analysis (source,R code) |
Downloads:
| Package source: | qtl2pleio_1.4.3.tar.gz |
| Windows binaries: | r-devel:qtl2pleio_1.4.3.zip, r-release:qtl2pleio_1.4.3.zip, r-oldrel:qtl2pleio_1.4.3.zip |
| macOS binaries: | r-release (arm64):qtl2pleio_1.4.3.tgz, r-oldrel (arm64):qtl2pleio_1.4.3.tgz, r-release (x86_64):qtl2pleio_1.4.3.tgz, r-oldrel (x86_64):qtl2pleio_1.4.3.tgz |
| Old sources: | qtl2pleio archive |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=qtl2pleioto link to this page.