statgenIBD: Calculation of IBD Probabilities
For biparental, three and four-way crosses Identity by Descent (IBD) probabilities can be calculated using Hidden Markov Models and inheritance vectors following Lander and Green (<https://www.jstor.org/stable/29713>) and Huang (<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.
| Version: | 1.0.9 |
| Depends: | R (≥ 3.6) |
| Imports: | data.table,ggplot2,Matrix,R.utils,rlang,Rcpp,statgenGWAS (≥ 1.0.9),stringi |
| LinkingTo: | Rcpp,RcppArmadillo |
| Suggests: | rmarkdown,knitr,tinytest |
| Published: | 2025-07-01 |
| DOI: | 10.32614/CRAN.package.statgenIBD |
| Author: | Martin Boer [aut], Bart-Jan van Rossum [aut, cre], Wenhao Li [ctb], Johannes Kruisselbrink [ctb] |
| Maintainer: | Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl> |
| BugReports: | https://github.com/Biometris/statgenIBD/issues |
| License: | GPL-2 |GPL-3 [expanded from: GPL] |
| URL: | https://biometris.github.io/statgenIBD/index.html,https://github.com/Biometris/statgenIBD/ |
| NeedsCompilation: | yes |
| Materials: | README,NEWS |
| In views: | Agriculture |
| CRAN checks: | statgenIBD results |
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