scregclust: Reconstructing the Regulatory Programs of Target Genes inscRNA-Seq Data
Implementation of the scregclust algorithm described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3> which reconstructs regulatory programs of target genes in scRNA-seq data. Target genes are clustered into modules and each module is associated with a linear model describing the regulatory program.
| Version: | 0.2.2 |
| Depends: | R (≥ 4.1.0) |
| Imports: | Matrix, stats, methods, utils,reshape,igraph, graphics, grid,cli,prettyunits,ggplot2,rlang,Rcpp (≥ 1.0.8) |
| LinkingTo: | Rcpp,RcppEigen |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2025-07-27 |
| DOI: | 10.32614/CRAN.package.scregclust |
| Author: | Felix Held [aut, cre], Ida Larsson [aut], Sven Nelander [aut], André Armatowski [ctb] |
| Maintainer: | Felix Held <felix.held at gmail.com> |
| BugReports: | https://github.com/scmethods/scregclust/issues |
| License: | GPL (≥ 3) |
| URL: | https://scmethods.github.io/scregclust/,https://github.com/scmethods/scregclust/ |
| NeedsCompilation: | yes |
| Citation: | scregclust citation info |
| Materials: | README,NEWS |
| CRAN checks: | scregclust results |
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