Tools necessary to reconstruct clonal affiliations from temporally and/or spatially separated measurements of viral integration sites. For this means it utilizes correlations present in the relative readouts of the integration sites. Furthermore, facilities for filtering of the data and visualization of different steps in the pipeline are provided with the package.
| Version: | 0.6.2 |
| Imports: | clValid,cluster,clv,dplyr,foreach,ggplot2,igraph,ltm,plyr,poweRlaw,reshape2,RColorBrewer,rlang,rmutil |
| Suggests: | knitr,markdown,mclust,testthat,gridExtra |
| Published: | 2021-08-06 |
| DOI: | 10.32614/CRAN.package.MultIS |
| Author: | Sebastian Wagner [cre, aut], Christoph Baldow [aut], Ingmar Glauche [ths] |
| Maintainer: | Sebastian Wagner <sebastian.wagner3 at tu-dresden.de> |
| License: | LGPL-2 |LGPL-2.1 |LGPL-3 [expanded from: LGPL] |
| NeedsCompilation: | no |
| CRAN checks: | MultIS results |