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nLTT: Calculate the NLTT Statistic

Provides functions to calculate the normalised Lineage-Through- Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.

Version:	1.4.10
Imports:	ape,coda,testit
Suggests:	TreeSim,DDD,ggplot2,Hmisc,knitr,lintr,microbenchmark,plyr,reshape2,rmarkdown, TESS,testthat,DAISIE
Published:	2025-05-06
DOI:	10.32614/CRAN.package.nLTT
Author:	Thijs Janzen [aut, cre], Richèl J.C. Bilderbeek [aut], Pedro Neves [ctb]
Maintainer:	Thijs Janzen <thijsjanzen at gmail.com>
BugReports:	https://github.com/thijsjanzen/nLTT/issues
License:	GPL-2
URL:	https://github.com/thijsjanzen/nLTT
NeedsCompilation:	no
In views:	Phylogenetics
CRAN checks:	nLTT results

Documentation:

Reference manual:	nLTT.html ,nLTT.pdf
Vignettes:	How to visualize nLTT values distributions (source,R code) nltt_diff functions (source,R code) How to plot multiple nLTTs and their average (source,R code) How to stretch an nLTT timepoints matrix (source,R code) Trees with a root edge (source,R code) Walkthrough (source,R code)

Downloads:

Package source:	nLTT_1.4.10.tar.gz
Windows binaries:	r-devel:nLTT_1.4.10.zip, r-release:nLTT_1.4.10.zip, r-oldrel:nLTT_1.4.10.zip
macOS binaries:	r-release (arm64):nLTT_1.4.10.tgz, r-oldrel (arm64):nLTT_1.4.10.tgz, r-release (x86_64):nLTT_1.4.10.tgz, r-oldrel (x86_64):nLTT_1.4.10.tgz
Old sources:	nLTT archive

Reverse dependencies:

Reverse suggests:

babette,mcbette,nodeSub,treestats

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=nLTTto link to this page.