Population genetics package for designing diagnostic panels. Candidate markers, marker combinations, and different panel sizes are assessed for how well they can predict the source population of known samples. Requires a genotype file of candidate markers in STRUCTURE format. Methods for population cross-validation are described in Jombart (2008) <doi:10.1093/bioinformatics/btn129>.
| Version: | 2.1.1 |
| Depends: | R (≥ 2.10) |
| Imports: | adegenet,doParallel,dplyr,forcats,foreach,ggplot2, graphics,magrittr, parallel,readr,tidyr, utils,withr,yaml |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2024-02-20 |
| DOI: | 10.32614/CRAN.package.snpAIMeR |
| Author: | Kim Vertacnik [cre, aut], Oksana Vernygora [aut], Julian Dupuis [aut] |
| Maintainer: | Kim Vertacnik <kim.vertacnik at mailbox.org> |
| Contact: | Kim Vertacnik <kim.vertacnik@mailbox.org> or Julian Dupuis
<julian.dupuis@uky.edu> |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/OksanaVe/snpAIMeR |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | snpAIMeR results |